Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 5.4e-182 641.7 588 100.0
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 2.1e-157 560.1 593 91.7
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 1.3e-132 477.6 593 84.5
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.1e-121 439.5 600 81.7
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.3e-121 439.1 602 81.7
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.7e-119 434.1 607 80.7
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-119 434.1 602 81.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.0e-116 424.9 334 81.4
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.3e-114 417.9 334 80.8
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.8e-114 416.8 335 81.5
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.1e-113 413.3 582 79.6
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 1.7e-111 407.5 334 79.9
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-109 401.0 336 78.3
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-109 401.0 336 78.3
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 3.6e-109 399.8 334 77.2
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 3.6e-109 399.8 334 78.4
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 2.6e-107 393.7 335 77.6
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 3.3e-107 393.3 317 81.4
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 5.7e-107 392.5 337 77.2
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 5.7e-107 392.5 334 76.3
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 4.1e-105 386.3 334 76.9
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 1.2e-104 384.8 303 82.2
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.2e-104 384.8 334 77.2
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.5e-104 384.4 337 75.4
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.5e-104 384.4 336 77.7
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 3.5e-104 383.3 336 76.5
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 7.7e-104 382.1 337 75.1
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.9e-103 380.2 331 75.5
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 6.5e-103 379.0 334 76.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 8.5e-103 378.6 335 75.5
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.1e-102 378.3 336 75.3
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.1e-102 378.3 305 82.0
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 3.2e-102 376.7 337 74.8
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 3.2e-102 376.7 334 76.3
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 3.2e-102 376.7 335 75.2
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 9.4e-102 375.2 336 73.5
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 4.7e-101 372.9 304 80.6
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 6.1e-101 372.5 335 74.6
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 1.8e-100 370.9 335 74.6
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.3e-100 370.5 304 80.6
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 3.9e-100 369.8 306 79.1
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.9e-100 369.8 304 80.3
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 5.2e-100 369.4 335 72.2
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 8.8e-100 368.6 297 81.5
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.1e-99 368.2 314 77.4
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.5e-99 367.9 319 77.1
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.5e-99 367.9 297 82.5
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 2.0e-99 367.5 306 78.1
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 2.0e-99 367.5 305 78.7
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.6e-99 367.1 297 75.1
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.6e-99 367.1 309 79.3
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 7.4e-99 365.5 297 82.2
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 9.7e-99 365.2 305 79.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.3e-98 364.8 306 80.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.2e-98 364.0 304 79.3
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 3.7e-98 363.2 297 80.5
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 3.7e-98 363.2 300 80.0
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 3.7e-98 363.2 311 76.8
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 6.3e-98 362.5 317 76.0
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 6.3e-98 362.5 305 78.7
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 8.2e-98 362.1 335 72.5
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.4e-97 361.3 335 72.5
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 5.3e-97 359.4 309 76.4
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 3.5e-96 356.7 344 72.7
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 5.9e-96 355.9 337 57.6
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.7e-95 354.4 343 70.6
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.2e-95 354.0 304 77.0
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 2.9e-95 353.6 293 82.9
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.1e-94 351.7 295 78.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 9.4e-94 348.6 335 72.2
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.2e-93 348.2 307 69.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 2.3e-92 344.0 304 75.7
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 5.2e-92 342.8 302 77.5
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 5.2e-92 342.8 304 75.0
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.5e-91 341.3 295 77.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 5.7e-91 339.3 303 73.9
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 1.7e-90 337.8 306 75.2
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.2e-90 337.4 305 74.4
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 1.1e-89 335.1 585 74.7
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 4.1e-89 333.2 335 70.4
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 4.1e-89 333.2 306 73.2
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 5.4e-89 332.8 331 70.7
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 9.1e-89 332.0 303 57.8
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 9.1e-89 332.0 304 72.4
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 9.1e-89 332.0 335 70.1
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 1.2e-88 331.6 335 69.9
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-88 331.3 341 54.5
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 8.5e-87 325.5 317 71.0
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.5e-86 324.7 335 69.9
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 5.5e-86 322.8 293 76.8
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 3.0e-84 317.0 316 69.9
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 3.4e-83 313.5 317 71.6
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 4.4e-83 313.2 311 71.7
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.1e-78 298.5 293 74.1
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.8e-76 291.2 541 75.8
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 6.6e-71 272.7 307 51.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 3.3e-70 270.4 283 72.8
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 7.0e-65 252.7 183 69.9
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 4.7e-61 240.0 211 84.4
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 5.4e-57 226.5 136 78.7
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.6e-54 216.5 123 86.2
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 3.4e-51 207.2 161 64.6
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.7e-50 203.8 146 65.1
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 7.1e-49 199.5 196 81.1
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 7.1e-41 172.9 97 88.7
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.7e-39 168.3 98 83.7
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 4.6e-32 143.7 263 48.7
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 8.1e-29 132.9 262 48.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.4e-28 132.1 336 33.6
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.3e-26 125.6 268 44.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 5.5e-25 120.2 80 73.8
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.3e-21 109.0 78 69.2
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.4e-20 105.5 66 80.3
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 6.0e-16 90.1 113 48.7
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.0e-10 72.8 104 45.2
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 1.9e-09 68.6 48 66.7
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 3.5e-08 64.3 33 97.0
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 2.3e-07 61.6 33 93.9
SEGI_19840 Sequoiadendron giganteum HOM05D006642 ORTHO05D027104 7.4e-06 56.6 44 61.4
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 9.7e-06 56.2 108 27.8


User provided reference genes

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