Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.3e-66 256.1 118 100.0
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 1.2e-56 223.0 113 88.5
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 1.6e-56 222.6 111 89.2
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 2.0e-56 222.2 118 84.7
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 2.7e-56 221.9 115 87.0
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 3.5e-56 221.5 113 86.7
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 5.9e-56 220.7 118 82.2
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 5.9e-56 220.7 120 83.3
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 7.8e-56 220.3 111 89.2
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.0e-55 219.9 116 84.5
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.0e-55 219.9 113 87.6
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.3e-55 219.5 115 86.1
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.7e-55 219.2 113 86.7
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.7e-55 219.2 115 84.3
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 2.3e-55 218.8 118 83.9
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 2.3e-55 218.8 116 85.3
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.3e-55 218.8 116 86.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.0e-55 217.6 113 85.8
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.0e-55 217.6 113 85.8
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 5.0e-55 217.6 113 85.8
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 8.6e-55 216.9 113 85.0
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 8.6e-55 216.9 113 85.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 8.6e-55 216.9 115 85.2
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.1e-54 216.5 112 87.5
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 1.5e-54 216.1 113 85.0
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.9e-54 215.7 111 87.4
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 2.5e-54 215.3 113 84.1
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 4.3e-54 214.5 112 85.7
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 4.3e-54 214.5 111 84.7
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 5.6e-54 214.2 113 85.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 7.3e-54 213.8 111 85.6
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 7.3e-54 213.8 115 83.5
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 7.3e-54 213.8 111 85.6
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 7.3e-54 213.8 112 84.8
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.2e-53 213.0 113 83.2
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.6e-53 212.6 113 81.4
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.6e-53 212.6 113 81.4
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 2.1e-53 212.2 113 81.4
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 2.8e-53 211.8 111 83.8
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.8e-53 211.8 112 82.1
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 2.8e-53 211.8 115 80.9
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 3.6e-53 211.5 112 85.7
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 6.2e-53 210.7 112 83.9
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.2e-53 210.7 112 83.0
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 6.2e-53 210.7 112 83.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 8.0e-53 210.3 111 82.9
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.0e-52 209.9 111 83.8
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.0e-52 209.9 115 82.6
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.0e-52 209.9 118 82.2
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.4e-52 209.5 111 82.0
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.1e-52 208.4 113 82.3
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 4.0e-52 208.0 112 83.0
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 5.2e-52 207.6 111 82.9
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 5.2e-52 207.6 112 81.2
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 5.2e-52 207.6 116 78.4
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.2e-52 207.6 113 81.4
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 5.2e-52 207.6 116 77.6
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 5.2e-52 207.6 112 82.1
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 6.8e-52 207.2 111 80.2
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.2e-51 206.5 111 81.1
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.2e-51 206.5 111 81.1
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.2e-51 206.5 111 82.9
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.2e-51 206.5 115 79.1
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.2e-51 206.5 110 82.7
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.4e-51 204.9 111 81.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 3.4e-51 204.9 111 79.3
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.4e-51 204.9 111 80.2
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 4.4e-51 204.5 111 79.3
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 4.4e-51 204.5 111 79.3
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 4.4e-51 204.5 111 79.3
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 4.4e-51 204.5 111 79.3
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 4.4e-51 204.5 113 80.5
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 4.4e-51 204.5 113 80.5
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 5.8e-51 204.1 110 81.8
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 5.8e-51 204.1 110 81.8
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 5.8e-51 204.1 110 81.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.8e-51 204.1 116 78.4
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 7.5e-51 203.8 110 81.8
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 7.5e-51 203.8 118 77.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.5e-51 203.8 111 79.3
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 9.8e-51 203.4 111 81.1
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-50 203.0 115 80.0
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.3e-50 203.0 110 81.8
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.7e-50 202.6 115 78.3
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.7e-50 202.6 118 78.8
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 1.7e-50 202.6 111 79.3
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.2e-50 202.2 113 77.9
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.9e-50 201.1 111 79.3
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.9e-50 201.1 111 79.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 6.4e-50 200.7 112 75.9
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 8.3e-50 200.3 111 77.5
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.9e-49 199.1 111 80.2
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.4e-49 198.7 103 86.4
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 4.1e-49 198.0 117 74.4
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 4.6e-48 194.5 149 63.1
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 4.6e-48 194.5 112 75.9
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 6.0e-48 194.1 112 75.9
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 6.0e-48 194.1 112 75.9
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 7.8e-48 193.7 112 75.9
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.0e-47 191.8 110 73.6
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 5.0e-47 191.0 96 88.5
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.1e-46 189.9 112 70.5
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.1e-46 189.9 112 70.5
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 2.5e-46 188.7 173 55.5
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 5.6e-46 187.6 112 72.3
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 9.5e-46 186.8 98 82.7
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-45 186.0 96 86.5
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.6e-45 186.0 110 77.3
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 1.6e-45 186.0 96 85.4
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-44 183.3 100 81.0
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.8e-44 182.6 96 84.4
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-43 179.9 112 70.5
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-43 179.9 112 70.5
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 2.6e-43 178.7 95 82.1
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.8e-43 176.8 98 80.6
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.3e-42 176.4 107 69.2
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 3.2e-41 171.8 140 57.1
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 5.4e-41 171.0 122 65.6
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.6e-40 169.5 110 64.5
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 7.8e-40 167.2 108 66.7
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 5.1e-39 164.5 113 63.7
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.9e-38 162.5 107 63.6
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.5e-38 162.2 84 83.3
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 4.7e-37 157.9 132 59.1
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.4e-36 156.4 95 73.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 6.8e-36 154.1 79 83.5
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 6.8e-36 154.1 78 83.3
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.2e-35 153.3 79 83.5
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 4.9e-34 147.9 75 85.3
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.1e-33 146.7 74 83.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.2e-32 143.3 75 84.0
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.7e-32 142.1 74 85.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.5e-30 136.3 74 77.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 1.5e-27 126.3 92 55.4
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.5e-27 126.3 100 49.0
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 6.4e-26 120.9 99 65.7
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.2e-25 118.2 96 62.5
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.6e-24 116.3 99 46.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.9e-22 109.4 80 65.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.6e-21 105.1 81 61.7
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 9.0e-20 100.5 93 54.8
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 9.0e-20 100.5 93 54.8
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 9.0e-20 100.5 93 54.8
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 9.9e-19 97.1 108 40.7
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.7e-18 96.3 164 39.6
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 2.2e-18 95.9 58 72.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.8e-15 86.3 56 73.2
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 8.7e-15 84.0 88 38.6
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 3.3e-14 82.0 77 55.8
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 5.6e-14 81.3 83 43.4
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.4e-12 76.6 41 85.4
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 1.8e-12 76.3 38 92.1
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.4e-09 66.6 80 46.2


User provided reference genes

Program Settings