Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 2181.8 1117 100.0
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1697.6 1116 80.9
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1680.6 1120 80.3
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1641.7 1118 78.9
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1632.1 1125 78.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1622.4 1125 77.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1528.8 1148 71.9
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1520.4 1197 71.4
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1516.5 1127 74.8
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1500.3 1222 68.3
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1497.6 1116 73.7
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1447.2 873 86.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1436.4 1070 71.0
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1426.4 1160 66.4
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1425.6 1160 66.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1424.5 1198 66.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1421.8 1138 67.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1420.6 1138 67.4
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1418.7 1202 64.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1416.7 1136 67.6
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1404.8 1148 67.2
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1404.4 1152 66.8
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1392.1 1201 63.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1390.9 1106 67.5
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1384.0 1153 65.3
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1370.1 1153 65.0
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1353.2 833 85.0
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1349.3 1155 63.9
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1348.6 1145 64.1
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1341.6 1168 63.2
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1328.9 952 72.9
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1325.1 1004 68.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1320.1 1142 62.3
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1319.7 1230 60.0
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1316.6 1147 63.1
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1315.4 1007 67.7
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1315.4 1147 62.9
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1314.3 1154 61.9
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1309.3 1151 62.6
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1308.1 1021 66.9
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1303.5 1147 62.8
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1302.3 1164 61.9
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1300.0 1153 61.9
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1295.0 1147 61.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1291.2 1227 59.0
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1288.5 914 71.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1287.7 1203 60.5
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1287.3 1155 61.0
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1285.8 1161 61.8
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1285.4 1186 60.5
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1285.0 1144 61.5
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1280.0 1188 60.4
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 1158 60.2
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1271.9 872 75.6
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1268.1 1086 64.7
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1259.6 1334 55.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1257.7 1224 58.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1257.3 1088 62.8
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1255.4 1034 65.2
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1251.5 921 71.0
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1246.9 1186 58.2
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1246.5 1209 58.1
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1239.2 919 68.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1223.0 1112 61.5
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1216.8 1226 56.6
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1208.4 1268 56.1
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1189.9 1200 55.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1186.0 1186 56.2
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1177.2 1180 56.3
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1176.8 1219 56.1
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 1220 55.7
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1173.7 769 80.9
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1171.0 1178 56.4
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1162.1 1182 55.8
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1159.1 963 63.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1131.7 1211 55.2
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 938 65.6
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1099.7 810 70.7
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1084.3 980 62.1
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 0.0e+00 1083.9 862 68.9
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1082.8 1030 58.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.5e-310 1069.7 807 68.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 6.4e-309 1064.3 628 87.9
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.9e-305 1052.7 1014 59.2
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.7e-304 1048.1 853 65.2
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.3e-290 1003.4 1002 56.2
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.2e-278 963.8 1137 51.2
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 6.7e-274 948.0 690 70.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.8e-271 939.9 688 69.5
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.8e-264 916.0 958 51.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.4e-262 909.1 974 50.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.3e-261 907.1 1029 49.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 5.0e-253 878.6 1128 49.1
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.2e-242 842.0 945 49.5
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.7e-240 837.0 594 72.9
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 7.7e-238 828.2 612 68.5
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-236 823.5 987 47.6
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.9e-213 746.5 1066 46.1
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 7.3e-212 741.9 714 59.7
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.8e-195 686.8 695 58.1
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 3.7e-192 676.4 497 70.0
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.7e-189 667.5 502 67.5
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-176 624.4 396 81.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 4.0e-162 576.6 742 46.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 7.4e-156 555.8 415 69.9
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.4e-154 550.8 754 43.2
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 6.3e-147 526.2 388 70.6
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.7e-131 473.8 332 75.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 8.5e-128 462.6 421 61.3
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.0e-117 429.1 348 66.1
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-89 335.9 256 71.5
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 8.6e-88 329.7 396 44.4
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.9e-80 304.3 233 70.8
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.8e-68 263.8 527 36.6
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.1e-65 255.4 227 57.3
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-65 255.4 212 67.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.0e-64 253.1 206 64.1
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 6.6e-64 250.4 165 80.0
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-63 249.6 313 47.3
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.3e-62 246.1 717 29.3
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 6.9e-61 240.4 161 73.3
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-57 229.2 231 53.2
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 6.7e-56 223.8 165 66.7
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-54 219.2 255 49.0
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.1e-53 214.9 162 65.4
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-48 199.5 151 65.6
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.5e-47 195.3 700 28.1
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-45 189.5 657 26.9
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 4.0e-45 188.0 456 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.8e-44 184.1 740 26.4
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.9e-43 181.0 228 47.4
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.5e-42 178.7 765 26.9
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.2e-42 177.9 852 24.6
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 7.1e-42 177.2 743 26.0
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.3e-40 172.2 155 54.2
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.3e-39 168.3 179 53.6
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-39 168.3 295 38.6
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.1e-38 165.6 140 62.1
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.7e-38 164.9 136 57.4
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.9e-36 157.5 149 56.4
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.6e-33 147.9 155 52.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.9e-31 142.5 792 25.9
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-30 139.4 127 60.6
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-30 139.4 161 49.1
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.8e-29 136.0 908 23.2
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 4.5e-28 131.3 73 86.3
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.9e-27 128.6 755 23.2
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 6.7e-24 117.5 114 61.4
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 7.4e-23 114.0 82 67.1
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 4.8e-22 111.3 489 24.5
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-21 110.2 293 30.0
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 1.4e-21 109.8 105 48.6
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.3e-19 103.2 69 78.3
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.9e-18 99.4 260 28.5
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 2.7e-17 95.5 679 26.2
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 7.9e-17 94.0 266 34.2
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.3e-13 81.3 431 24.6
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-11 77.0 119 38.7
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 1.3e-11 76.6 86 48.8
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 1.5e-10 73.2 84 52.4
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 2.5e-10 72.4 79 46.8
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 9.4e-10 70.5 79 46.8
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.4e-08 66.6 101 42.6
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.3e-07 62.0 183 32.8


User provided reference genes

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