Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2581.6 1315 100.0
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2308.1 1325 88.8
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2275.7 1322 87.1
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2202.9 1321 83.9
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2193.7 1323 82.8
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2189.5 1323 82.7
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2187.5 1323 82.6
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2185.2 1323 82.4
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2172.5 1323 82.0
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2055.8 1241 82.3
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1931.4 1325 72.5
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1919.4 1325 72.3
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1906.0 1319 72.4
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1900.9 1325 73.1
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1873.2 1329 72.0
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1865.5 1327 71.3
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1863.6 1327 71.7
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1860.5 1330 70.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1859.0 1329 71.6
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1852.8 1324 71.1
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1848.2 1326 70.1
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1846.2 1324 70.3
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1842.0 1331 69.4
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1838.9 1322 70.3
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1838.2 1323 70.1
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1812.0 1331 68.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1805.0 1242 73.5
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1801.2 1327 68.0
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1766.1 1245 72.4
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1757.3 1324 66.6
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1753.8 1317 67.8
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1753.0 1325 66.9
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1751.1 1321 66.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1748.4 1325 66.7
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1746.5 1325 67.3
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1739.9 1319 66.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1737.2 1321 65.9
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1721.4 1276 67.2
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1717.6 1322 66.0
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1714.9 1327 65.5
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1712.2 1326 66.9
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1700.3 1318 64.9
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1700.3 1317 66.4
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1698.7 1336 63.0
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1692.6 1320 65.3
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1691.0 1269 69.0
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1690.6 1321 65.2
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1686.0 1322 65.1
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1681.8 1341 63.8
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1675.6 1322 64.4
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1674.4 1320 64.7
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1671.0 1341 63.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1668.3 1319 64.8
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1666.0 1320 63.6
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1661.7 1328 63.3
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1660.2 1319 63.5
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1657.9 1327 63.1
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1657.5 1334 62.5
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1655.6 1330 62.6
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1647.5 1329 62.7
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1640.6 1341 61.7
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1639.0 1328 62.3
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1624.4 1264 64.2
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1621.7 1239 66.0
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1615.9 1096 74.3
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1609.3 1342 61.1
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1582.0 1100 71.5
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1577.8 1328 60.5
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1572.8 1325 61.8
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1564.3 1327 60.0
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1563.1 1334 60.6
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1562.0 1190 65.7
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1562.0 1281 64.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1561.2 1332 60.1
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1560.8 1332 60.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1560.4 1332 60.4
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1560.0 1329 60.4
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1558.1 1326 59.9
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1556.2 1324 60.6
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1551.2 1327 60.0
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1355 57.8
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1530.8 1326 60.5
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1523.1 1323 59.6
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1497.6 1110 67.3
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1490.7 1130 65.8
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1488.8 1322 58.3
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1480.3 1325 58.0
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1457.6 1091 66.9
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1432.2 1552 51.2
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1429.8 1335 54.1
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1412.5 1321 58.1
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1398.3 1339 52.7
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1379.8 1150 61.0
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1375.1 1346 54.7
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1350.9 1327 53.6
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1335.5 942 70.6
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1233.8 902 68.1
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1182.5 1330 51.2
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1157.5 864 68.5
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1121.7 1256 49.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.3e-308 1063.5 756 71.6
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 1.4e-251 874.0 1359 38.2
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 2.5e-235 820.1 854 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 5.9e-229 798.9 1194 39.4
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 3.2e-227 793.1 1185 39.6
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 8.8e-225 785.0 1299 38.2
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 4.2e-211 739.6 807 50.4
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 4.9e-159 566.6 1523 30.1
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 5.1e-140 503.4 358 70.9
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 8.2e-138 496.1 460 58.9
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 1.9e-134 485.0 377 64.5
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 2.0e-96 358.6 1489 25.8
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 4.4e-91 340.9 332 56.6
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.8e-89 335.5 1537 26.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 2.8e-85 321.6 305 55.1
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 3.0e-79 301.6 255 57.3
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.9e-65 255.8 196 68.9
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 2.1e-64 252.3 1178 25.0
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-62 245.0 233 54.5
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 1.3e-58 233.0 256 49.2
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.8e-52 212.6 167 67.7
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 9.6e-46 190.3 1352 24.5
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-40 173.3 130 67.7
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 5.6e-38 164.5 121 68.6
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.3e-29 136.7 289 37.0
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 4.2e-25 121.7 116 54.3


User provided reference genes

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