Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.8e-302 1040.4 537 100.0
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 8.5e-142 508.1 595 48.1
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 7.2e-141 505.0 584 51.5
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.6e-140 502.7 543 51.4
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.8e-128 463.8 290 76.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 8.5e-126 454.9 509 50.3
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.5e-125 453.4 512 48.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.2e-118 430.3 525 45.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 8.8e-115 418.3 548 47.1
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.6e-114 416.8 571 46.2
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.0e-110 402.5 573 45.9
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.8e-108 396.7 552 42.6
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 9.8e-106 388.3 586 43.7
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 9.8e-106 388.3 540 41.7
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.9e-105 386.7 522 46.2
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.8e-104 384.0 539 46.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.0e-103 380.6 538 41.1
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 7.8e-103 378.6 545 42.0
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.6e-100 370.9 535 45.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.0e-99 368.2 535 44.5
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 4.4e-98 362.8 586 36.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.7e-97 360.9 517 44.1
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 4.9e-97 359.4 575 42.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.1e-96 358.2 550 43.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.2e-96 356.7 569 38.3
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 4.1e-96 356.3 553 41.2
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.4e-96 355.9 564 42.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 9.2e-96 355.1 544 43.0
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.2e-95 354.8 538 42.0
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.7e-95 353.6 535 38.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.6e-95 352.8 561 38.9
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 7.8e-95 352.1 517 39.8
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.3e-94 351.3 546 43.4
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.7e-94 350.9 553 42.3
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 2.3e-94 350.5 508 40.0
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 6.6e-94 349.0 561 38.7
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 8.6e-94 348.6 539 42.7
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.1e-93 348.2 533 40.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-93 347.1 561 38.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.5e-93 347.1 577 41.8
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.3e-93 346.7 527 41.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.3e-93 346.7 561 38.5
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.3e-93 346.7 546 38.5
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.1e-92 344.0 511 42.9
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.1e-91 340.1 525 41.3
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 3.4e-90 336.7 534 39.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.3e-89 334.7 527 40.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.7e-89 334.3 533 42.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-89 334.3 304 53.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.2e-89 334.0 489 39.9
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.7e-89 333.2 543 40.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 4.9e-89 332.8 549 40.3
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.4e-89 332.4 544 42.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-88 331.3 561 40.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.4e-88 331.3 503 38.6
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.4e-88 330.5 532 41.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 3.5e-87 326.6 537 39.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.5e-87 326.6 542 36.9
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.8e-87 325.5 501 42.7
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.0e-86 323.6 468 43.8
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.5e-85 321.2 551 37.7
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 9.5e-85 318.5 552 39.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-84 317.8 554 39.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.8e-84 317.0 605 39.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.4e-83 314.7 508 41.7
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.1e-83 313.5 496 37.9
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.4e-82 309.7 515 41.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.3e-81 308.1 530 40.8
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.3e-81 308.1 561 35.7
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.9e-81 307.0 548 39.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 4.1e-80 303.1 537 39.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 4.1e-80 303.1 513 38.6
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.5e-79 300.1 495 35.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 7.8e-79 298.9 538 39.8
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.3e-78 298.1 561 39.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 2.3e-78 297.4 550 38.7
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.9e-78 296.6 470 38.9
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.9e-77 294.3 257 54.9
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-76 291.6 532 36.5
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 2.8e-76 290.4 505 35.0
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.8e-75 287.7 558 37.1
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 8.9e-75 285.4 535 37.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.4e-74 283.1 571 32.7
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.2e-72 276.6 495 34.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-71 274.6 481 35.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.3e-69 266.9 303 46.9
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 4.3e-69 266.5 309 46.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 4.3e-69 266.5 308 46.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.6e-68 264.6 559 36.9
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.1e-67 261.9 508 37.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.1e-67 260.4 440 39.5
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.5e-66 258.1 453 37.5
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-65 255.0 316 43.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.9e-65 253.8 483 33.1
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 9.3e-64 248.8 252 63.5
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.6e-63 246.5 381 44.4
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.9e-61 241.1 596 28.9
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.1e-60 237.7 303 42.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.8e-60 237.3 380 46.8
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.4e-59 235.0 383 44.4
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 7.9e-55 219.2 297 41.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 4.3e-53 213.4 241 45.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 3.8e-49 200.3 668 27.1
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.8e-44 183.3 238 41.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.5e-40 171.0 361 32.7
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.1e-35 152.5 255 45.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.5e-33 146.4 118 58.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.5e-32 143.3 144 50.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 5.7e-29 133.3 240 46.2
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.6e-26 124.4 109 53.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 4.5e-26 123.6 102 52.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 5.9e-26 123.2 156 55.1
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.9e-25 120.9 105 56.2
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.8e-25 120.6 87 58.6
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.8e-25 120.6 149 43.6
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.5e-25 119.4 232 31.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.4e-24 118.6 108 50.0
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 3.2e-24 117.5 111 48.6
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 5.5e-24 116.7 95 51.6
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-23 115.5 108 50.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 5.2e-22 110.2 104 48.1
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.2e-20 104.8 99 49.5
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.2e-20 104.8 120 44.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.2e-20 104.8 108 43.5
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.8e-20 104.4 98 49.0
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.3e-20 103.2 84 50.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.3e-19 100.1 80 53.8
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-17 95.1 75 56.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.1e-16 92.4 69 56.5
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-15 87.4 201 31.8
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 6.1e-15 86.7 69 52.2
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 4.0e-14 84.0 92 45.7
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 8.8e-14 82.8 60 65.0
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.0e-13 81.6 84 48.8
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 3.3e-13 80.9 83 49.4
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.4e-13 80.5 62 53.2
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 9.7e-13 79.3 71 45.1
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 9.7e-13 79.3 88 46.6
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-12 78.6 58 53.4
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.7e-12 77.4 57 57.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-10 71.6 73 47.9
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.8e-09 67.4 77 42.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.8e-09 67.4 77 42.9
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.1e-08 65.9 195 27.2
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 9.4e-08 62.8 47 55.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.4e-08 62.8 72 38.9
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 3.6e-07 60.8 60 53.3
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 1.0e-06 59.3 57 54.4
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.3e-06 58.2 42 50.0


User provided reference genes

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