Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.4e-99 366.3 184 100.0
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 5.1e-70 268.1 195 75.4
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.2e-56 221.9 151 77.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.6e-52 209.9 196 62.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.9e-49 198.4 190 60.5
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.9e-49 198.4 186 60.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-47 192.2 190 58.9
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 6.7e-46 188.0 189 58.2
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.6e-45 184.1 149 69.1
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.0e-41 174.1 207 53.6
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.0e-41 174.1 188 55.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.1e-40 170.6 153 62.1
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.5e-40 169.5 158 60.1
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.1e-39 166.4 141 65.2
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.8e-38 163.3 190 54.2
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.5e-37 160.2 172 55.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.5e-37 160.2 158 58.2
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.5e-37 159.5 166 57.2
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.6e-36 156.8 147 61.9
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.6e-36 156.8 197 47.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.1e-36 156.4 147 59.9
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.1e-36 156.4 153 55.6
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.1e-36 156.4 147 57.8
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 6.2e-36 154.8 162 57.4
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.1e-35 154.1 199 49.7
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.1e-35 154.1 153 52.9
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.4e-35 153.7 148 58.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 4.1e-35 152.1 153 56.9
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 5.3e-35 151.8 153 52.3
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 6.9e-35 151.4 149 61.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.0e-35 151.0 143 58.7
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.2e-34 150.6 145 60.0
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.2e-34 150.6 149 57.7
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.2e-34 150.6 148 59.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 3.4e-34 149.1 229 44.1
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 7.6e-34 147.9 143 58.0
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 7.6e-34 147.9 149 59.1
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.0e-33 147.5 139 58.3
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.3e-33 147.1 145 57.2
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.3e-33 147.1 139 59.0
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.7e-33 146.7 180 51.7
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.2e-33 146.4 150 58.7
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.9e-33 146.0 142 60.6
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.9e-33 146.0 180 48.9
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.8e-33 145.6 148 58.1
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 5.0e-33 145.2 149 58.4
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.5e-33 144.8 180 48.3
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.5e-33 144.8 180 48.3
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.4e-32 143.7 147 57.8
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.4e-32 143.7 155 51.6
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.4e-32 143.7 155 52.3
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.9e-32 143.3 155 52.3
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 3.2e-32 142.5 139 59.0
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 5.5e-32 141.7 157 51.0
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 7.2e-32 141.4 146 56.2
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 7.2e-32 141.4 144 58.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 9.3e-32 141.0 157 50.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 9.3e-32 141.0 151 55.0
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.2e-31 140.6 199 46.7
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.1e-31 139.8 146 56.2
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 2.7e-31 139.4 153 50.3
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.7e-31 139.4 166 48.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 6.1e-31 138.3 153 52.3
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.8e-30 136.7 151 51.7
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.8e-30 136.7 158 50.6
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 2.3e-30 136.3 149 51.7
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 3.0e-30 136.0 189 44.4
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.0e-30 136.0 153 51.6
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 3.9e-30 135.6 143 53.1
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.9e-30 135.6 152 48.7
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 5.1e-30 135.2 147 53.1
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 5.1e-30 135.2 144 55.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 8.7e-30 134.4 152 48.0
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 8.7e-30 134.4 195 46.7
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.5e-29 133.7 155 46.5
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.5e-29 133.7 144 53.5
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.5e-29 133.7 143 55.2
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.9e-29 133.3 145 53.1
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.9e-29 133.3 145 53.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 4.3e-29 132.1 138 55.1
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 9.7e-29 131.0 146 51.4
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 2.2e-28 129.8 158 47.5
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.2e-28 129.8 141 49.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 2.2e-28 129.8 143 51.0
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 3.7e-28 129.0 151 49.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 1.1e-27 127.5 127 57.5
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.8e-27 126.7 143 50.3
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 4.1e-27 125.6 127 57.5
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.2e-26 124.0 167 49.1
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 3.4e-26 122.5 160 50.6
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.4e-26 122.5 166 45.8
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.5e-26 122.1 174 44.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.7e-25 120.2 82 74.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.7e-25 120.2 82 74.4
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.7e-25 120.2 175 44.0
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 3.8e-25 119.0 169 45.0
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 2.5e-24 116.3 148 48.0
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-23 112.8 87 69.0
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.0e-22 110.9 139 46.8
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.8e-22 110.2 144 43.1
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.3e-22 109.8 151 43.7
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-21 107.1 89 56.2
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.5e-21 106.3 143 46.9
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 2.8e-20 102.8 91 56.0
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.7e-20 102.4 80 58.8
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 5.3e-19 98.6 115 53.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 5.3e-19 98.6 71 67.6
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.9e-19 98.2 153 41.8
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.0e-18 96.7 149 43.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 3.8e-17 92.4 146 42.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.1e-16 90.9 73 60.3
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.9e-16 90.1 179 38.5
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 4.2e-16 89.0 81 54.3
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 5.5e-16 88.6 110 46.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.9e-14 82.4 53 71.7
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.7e-12 77.0 97 42.3
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.2e-12 76.6 80 52.5
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 2.8e-12 76.3 91 47.3
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-10 70.9 173 31.2
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.9e-09 66.2 60 55.0
Cfa026016 Carpinus fangiana HOM05D000280 ORTHO05D000632 1.2e-07 60.8 161 29.2
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.1e-07 60.1 103 35.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.7e-07 58.9 50 60.0
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 4.7e-07 58.9 132 37.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.3e-06 56.6 154 35.1
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.2e-06 55.5 33 75.8


User provided reference genes

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