Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.6e-231 806.6 740 100.0
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 2.2e-116 424.1 452 72.3
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 4.1e-102 376.7 212 92.0
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 9.1e-102 375.6 302 82.8
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 4.5e-101 373.2 212 91.0
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 7.7e-101 372.5 283 78.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-100 371.7 212 90.1
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-100 371.7 212 90.1
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.7e-100 371.3 212 90.1
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.7e-100 371.3 212 90.1
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.9e-100 370.5 212 90.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.5e-100 369.4 285 85.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.9e-99 367.9 273 84.6
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.5e-99 367.5 212 89.2
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.2e-99 367.1 213 89.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.6e-98 364.8 212 89.2
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.6e-98 364.8 212 89.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-97 360.9 212 86.8
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 3.0e-97 360.5 222 87.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.9e-97 360.1 213 90.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 5.1e-97 359.8 305 76.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 6.7e-97 359.4 212 86.8
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 8.8e-97 359.0 213 87.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.5e-96 358.2 212 88.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.0e-96 357.8 216 86.6
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 2.0e-96 357.8 207 91.3
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 2.0e-96 357.8 272 78.3
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.6e-96 357.5 214 87.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.6e-96 357.5 302 76.5
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.6e-96 357.5 302 79.5
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.6e-96 357.5 212 88.2
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 2.6e-96 357.5 213 86.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.6e-96 357.5 299 72.6
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.3e-95 355.1 302 81.1
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.7e-95 354.8 212 86.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 3.7e-95 353.6 302 72.8
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.7e-95 353.6 274 82.8
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.8e-95 353.2 213 86.9
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 4.8e-95 353.2 211 86.3
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 4.8e-95 353.2 213 85.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.8e-95 353.2 213 85.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 8.2e-95 352.4 213 85.4
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 8.2e-95 352.4 213 86.9
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 8.2e-95 352.4 209 87.6
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.1e-94 352.1 213 85.0
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.8e-94 351.3 284 70.8
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.4e-94 350.9 208 87.0
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.1e-94 350.5 213 85.4
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 3.1e-94 350.5 309 77.7
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.1e-94 350.5 372 74.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 3.1e-94 350.5 383 65.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 4.1e-94 350.1 213 85.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.1e-94 350.1 372 70.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 5.3e-94 349.7 213 85.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.0e-93 347.8 302 71.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.0e-93 347.8 300 75.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.6e-93 347.4 210 87.6
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.6e-93 347.4 208 86.5
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.5e-93 347.1 291 78.4
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.5e-93 347.1 291 78.4
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 4.5e-93 346.7 214 85.0
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.5e-93 346.7 213 84.5
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.0e-92 345.5 213 83.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.0e-92 345.5 204 88.7
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.7e-92 344.7 214 84.6
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.7e-92 344.7 295 74.6
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.2e-92 344.4 213 85.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 2.2e-92 344.4 213 83.1
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 8.5e-92 342.4 278 77.3
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.4e-91 341.7 207 85.0
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-91 341.7 214 84.1
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.4e-91 341.7 214 84.1
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 3.2e-91 340.5 209 84.2
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.2e-91 340.5 304 74.7
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 5.5e-91 339.7 273 76.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.6e-90 338.2 212 83.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 4.7e-90 336.7 380 63.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.2e-89 333.2 252 73.8
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 5.2e-89 333.2 304 75.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 6.7e-89 332.8 213 80.8
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 2.6e-88 330.9 196 88.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 5.7e-88 329.7 303 73.6
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 7.4e-88 329.3 202 85.1
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-87 328.2 212 81.6
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 2.8e-87 327.4 212 81.1
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.7e-87 327.0 195 86.2
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 7.2e-83 312.8 293 61.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-82 312.0 213 74.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.2e-82 312.0 181 89.5
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.1e-82 309.7 287 73.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.2e-81 306.6 207 77.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.5e-80 305.1 193 83.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.0e-80 304.7 303 68.0
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-78 298.9 180 85.0
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.7e-77 292.7 212 70.8
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.2e-76 291.2 182 81.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 6.8e-73 279.6 225 70.2
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.8e-71 273.5 192 72.9
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.8e-70 271.6 198 73.7
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.3e-68 265.4 198 68.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.1e-67 262.3 196 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.9e-67 261.5 299 53.2
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.4e-65 255.4 157 87.3
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.8e-65 255.0 188 73.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.8e-62 245.0 179 74.9
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.0e-60 239.2 171 76.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 7.8e-53 213.0 193 61.1
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.9e-44 184.1 156 60.3
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.1e-35 156.0 94 86.2
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 3.1e-33 147.9 115 62.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.2e-30 137.9 103 75.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 7.3e-27 126.7 79 81.0
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 9.6e-27 126.3 201 39.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 4.0e-25 120.9 82 80.5
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.6e-24 116.7 200 37.5
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.8e-23 114.4 76 77.6
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.9e-23 114.0 64 89.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.4e-22 112.5 63 87.3
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.9e-20 104.4 63 82.5
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.8e-18 97.4 107 50.5
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 6.2e-18 97.1 56 83.9
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.1e-18 96.7 149 45.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.8e-17 95.5 63 77.8
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 6.9e-17 93.6 67 71.6
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 6.9e-17 93.6 180 36.1
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 4.9e-15 87.4 95 46.3
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 4.9e-15 87.4 95 46.3
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 6.4e-15 87.0 168 35.1
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.7e-13 81.6 52 75.0
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 3.9e-12 77.8 159 35.2
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 9.0e-09 66.6 59 61.0
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.0e-07 63.2 35 82.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 4.9e-07 60.8 36 77.8


User provided reference genes

Program Settings