Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.8e-190 669.1 332 100.0
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.2e-156 555.8 335 84.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 4.0e-150 535.0 333 80.2
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.4e-149 531.9 333 79.9
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.7e-148 529.6 333 79.6
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 2.4e-147 525.8 332 78.6
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.3e-144 515.4 336 76.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.4e-141 505.0 377 69.8
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.3e-140 503.4 336 75.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.4e-139 500.0 338 74.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 2.3e-137 492.7 326 75.2
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 3.0e-137 492.3 337 74.8
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.5e-136 490.0 331 74.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 7.3e-136 487.6 331 73.4
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 4.8e-135 485.0 330 73.3
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 4.0e-134 481.9 330 70.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 6.9e-134 481.1 332 69.6
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 4.5e-133 478.4 334 71.0
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 5.8e-133 478.0 327 73.1
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 9.9e-133 477.2 331 72.2
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.9e-132 474.9 334 69.8
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 8.4e-132 474.2 336 69.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 8.4e-132 474.2 334 70.7
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.9e-131 473.0 334 69.2
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.2e-130 470.3 335 70.7
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 3.5e-130 468.8 355 68.2
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 6.0e-130 468.0 334 68.9
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.3e-129 466.8 335 69.9
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.8e-129 466.5 334 69.5
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.0e-129 465.7 330 69.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 6.7e-129 464.5 337 68.8
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.5e-128 463.4 336 67.9
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 4.3e-128 461.8 335 67.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.6e-127 459.9 332 68.1
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.7e-127 458.8 331 68.3
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 3.1e-126 455.7 336 68.2
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.5e-125 453.4 332 69.6
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.5e-125 453.4 336 67.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 7.6e-125 451.1 336 66.1
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.3e-124 450.3 332 67.2
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.7e-124 449.9 330 67.6
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.2e-124 449.5 336 68.2
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 8.4e-124 447.6 335 67.2
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 8.4e-124 447.6 331 67.7
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.4e-123 446.0 331 68.6
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 7.1e-123 444.5 336 66.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.5e-122 442.2 344 64.5
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 4.6e-122 441.8 336 65.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.3e-121 440.3 336 66.1
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 8.7e-121 437.6 330 65.5
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.7e-121 437.6 329 65.7
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.9e-120 436.4 329 65.7
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.9e-120 436.4 338 65.1
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.3e-120 435.6 335 64.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.6e-119 433.3 335 64.2
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 2.8e-119 432.6 345 63.2
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.4e-118 430.3 328 66.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.8e-118 429.9 333 65.5
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.2e-117 427.2 320 69.7
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.4e-117 425.6 328 64.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.9e-116 422.5 334 63.8
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.9e-116 421.8 331 63.7
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.1e-115 420.6 338 62.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.5e-115 419.5 336 64.9
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.5e-115 419.5 336 64.9
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.5e-115 419.5 330 63.6
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 4.8e-111 405.2 331 64.4
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.4e-110 403.7 331 64.0
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 5.3e-110 401.7 328 62.2
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 2.0e-109 399.8 291 69.8
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.0e-108 397.5 331 61.6
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.7e-108 396.7 334 61.4
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.7e-108 396.7 333 61.0
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.9e-108 396.0 331 61.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.9e-108 396.0 333 61.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.9e-108 396.0 333 61.6
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-107 394.0 331 61.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.1e-107 394.0 333 60.7
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 7.2e-107 391.3 334 59.0
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 6.1e-106 388.3 341 59.2
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.8e-105 386.7 299 68.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.5e-104 383.6 335 58.2
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.8e-102 376.7 331 60.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 3.1e-102 375.9 333 57.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 6.9e-102 374.8 333 57.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.5e-101 372.1 328 58.2
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 3.8e-100 369.0 334 58.4
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 5.0e-100 368.6 354 55.4
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.5e-99 366.3 333 56.5
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 5.1e-97 358.6 333 56.8
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 5.7e-96 355.1 329 55.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 9.7e-96 354.4 333 55.6
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.1e-94 350.9 332 52.1
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.2e-92 343.2 309 57.3
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.2e-87 326.6 240 69.6
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.1e-78 296.2 355 46.2
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 9.1e-78 294.7 246 61.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 3.5e-77 292.7 332 48.5
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 4.2e-75 285.8 273 54.6
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.7e-68 263.8 341 45.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.7e-64 248.8 462 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 9.8e-64 248.1 311 44.4
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 2.8e-58 229.9 165 68.5
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.9e-55 219.9 150 70.0
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 4.9e-55 219.2 334 39.8
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.0e-53 213.8 189 58.7
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.8e-49 200.7 347 35.2
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 5.2e-49 199.1 171 63.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.1e-43 181.4 176 59.7
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.5e-37 159.8 145 55.2
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.6e-37 159.5 178 47.2
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 3.9e-36 156.4 160 54.4
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.6e-34 151.0 149 53.0
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 2.6e-32 143.7 152 48.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.8e-25 120.9 81 67.9
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 4.0e-25 119.8 133 55.6
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.4e-17 94.0 132 40.2
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 5.3e-17 92.8 59 64.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.5e-16 91.3 75 62.7
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 6.4e-15 85.9 71 57.7
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 7.9e-13 79.0 58 70.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 4.3e-11 73.2 57 56.1
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 2.0e-08 64.3 55 63.6
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-07 61.2 79 44.3
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 8.4e-07 58.9 119 30.3


User provided reference genes

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