Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G078700 Prunus persica HOM05D000112 ORTHO05D336099 5.3e-34 147.1 75 100.0
Prupe.1G368300 Prunus persica HOM05D000112 ORTHO05D005753 1.1e-18 96.3 54 90.7
FvH4_2g38760 Fragaria vesca HOM05D000112 ORTHO05D005753 3.5e-17 91.3 54 85.2
FAN20G0856 Fragaria x ananassa HOM05D000112 ORTHO05D005753 3.5e-17 91.3 54 85.2
FAN15G2249 Fragaria x ananassa HOM05D000112 ORTHO05D005753 1.0e-16 89.7 54 83.3
FAN27G1707 Fragaria x ananassa HOM05D000112 ORTHO05D005753 3.8e-16 87.8 54 83.3
RcHm_v2.0_Chr6g0302551 Rosa chinensis HOM05D000112 ORTHO05D005753 3.8e-16 87.8 54 83.3
COL.COLO4_26172 Corchorus olitorius HOM05D000112 ORTHO05D005753 1.6e-14 82.4 54 77.8
Duzib093G0353 Durio zibethinus HOM05D000112 ORTHO05D005753 1.6e-14 82.4 54 77.8
CANSAT25G2524 Cannabis sativa HOM05D000112 ORTHO05D005753 2.1e-14 82.0 54 77.8
MD08G1015500 Malus domestica HOM05D000112 ORTHO05D005753 2.1e-14 82.0 54 79.6
QL02p011050 Quercus lobata HOM05D000112 ORTHO05D005753 2.1e-14 82.0 54 75.9
Thecc.08G041300 Theobroma cacao HOM05D000112 ORTHO05D005753 2.1e-14 82.0 54 77.8
Duzib116G0112 Durio zibethinus HOM05D000112 ORTHO05D005753 4.7e-14 80.9 54 75.9
MD15G1014400 Malus domestica HOM05D000112 ORTHO05D005753 6.1e-14 80.5 54 79.6
CsaV3_3G045690 Cucumis sativus L. HOM05D000112 ORTHO05D005753 8.0e-14 80.1 62 67.7
ClCG05G018490 Citrullus lanatus HOM05D000112 ORTHO05D005753 1.0e-13 79.7 62 67.7
Gohir.D01G099100 Gossypium hirsutum HOM05D000112 ORTHO05D005753 1.0e-13 79.7 54 75.9
Gorai.002G124400 Gossypium raimondii HOM05D000112 ORTHO05D005753 1.0e-13 79.7 54 75.9
Potri.002G024700 Populus trichocarpa HOM05D000112 ORTHO05D005753 1.0e-13 79.7 54 77.8
Potri.005G236700 Populus trichocarpa HOM05D000112 ORTHO05D005753 1.0e-13 79.7 54 77.8
Sed0022302 Sechium edule HOM05D000112 ORTHO05D005753 1.0e-13 79.7 62 66.1
Sed0018524 Sechium edule HOM05D000112 ORTHO05D005753 1.4e-13 79.3 62 66.1
MELO3C003768.2 Cucumis melo HOM05D000112 ORTHO05D005753 2.3e-13 78.6 62 66.1
Gohir.A01G112300 Gossypium hirsutum HOM05D000112 ORTHO05D005753 3.0e-13 78.2 54 74.1
Sabra02G0020000 Salix brachista HOM05D000112 ORTHO05D005753 4.0e-13 77.8 54 75.9
Cpa.g.sc26.24 Carica papaya HOM05D000112 ORTHO05D005753 1.2e-12 76.3 54 68.5
Sabra05G0183000 Salix brachista HOM05D000112 ORTHO05D005753 1.5e-12 75.9 54 74.1
Haze_22609 Corylus avellana HOM05D000112 ORTHO05D005753 2.0e-12 75.5 54 68.5
Oeu024525.1 Olea europaea HOM05D000112 ORTHO05D005753 2.6e-12 75.1 54 72.2
Oeu054709.1 Olea europaea HOM05D000112 ORTHO05D005753 2.6e-12 75.1 54 72.2
CAN.G1271.14 Capsicum annuum HOM05D000112 ORTHO05D005753 4.4e-12 74.3 54 72.2
GSVIVG01009865001 Vitis vinifera HOM05D000112 ORTHO05D005753 4.4e-12 74.3 54 70.4
Ciclev10000183m.g Citrus clementina HOM05D000112 ORTHO05D005753 5.7e-12 73.9 54 70.4
Manes.18G015400 Manihot esculenta HOM05D000112 ORTHO05D005753 5.7e-12 73.9 54 70.4
Dinv31827 Davidia involucrata HOM05D000112 ORTHO05D005753 7.5e-12 73.6 54 72.2
Nn5g29278 Nelumbo nucifera HOM05D000112 ORTHO05D005753 7.5e-12 73.6 54 68.5
Dinv39501 Davidia involucrata HOM05D000112 ORTHO05D005753 1.3e-11 72.8 54 72.2
Eucgr.F02090 Eucalyptus grandis HOM05D000112 ORTHO05D005753 1.3e-11 72.8 54 70.4
TWI56G0085 Tripterygium wilfordii HOM05D000112 ORTHO05D005753 1.3e-11 72.8 54 70.4
VMungo0647G2445 Vigna mungo HOM05D000112 ORTHO05D005753 1.3e-11 72.8 54 64.8
Solyc04g081240.2 Solanum lycopersicum HOM05D000112 ORTHO05D005753 1.7e-11 72.4 54 70.4
Sopen04g034850 Solanum pennellii HOM05D000112 ORTHO05D005753 1.7e-11 72.4 54 70.4
PGSC0003DMG400003771 Solanum tuberosum HOM05D000112 ORTHO05D005753 1.7e-11 72.4 54 70.4
Aa31LG7G4360 Aethionema arabicum HOM05D000112 ORTHO05D005753 2.8e-11 71.6 54 64.8
TAR381G1492 Trochodendron aralioides HOM05D000112 ORTHO05D005753 2.8e-11 71.6 55 63.6
Cfa013927 Carpinus fangiana HOM05D000112 ORTHO05D005753 4.8e-11 70.9 55 67.3
Phvul.001G008200 Phaseolus vulgaris HOM05D000112 ORTHO05D005753 4.8e-11 70.9 54 63.0
THA.LOC104811390 Tarenaya hassleriana HOM05D000112 ORTHO05D005753 4.8e-11 70.9 54 64.8
MSTRG.1209 Avicennia marina HOM05D000112 ORTHO05D005753 6.3e-11 70.5 54 66.7
CiPaw.07G152500 Carya illinoinensis HOM05D000112 ORTHO05D005753 6.3e-11 70.5 54 64.8
TWI36G0522 Tripterygium wilfordii HOM05D000112 ORTHO05D005753 6.3e-11 70.5 54 68.5
Hma1.2p1_0638F.1_g193660 Hydrangea macrophylla HOM05D000112 ORTHO05D005753 8.3e-11 70.1 54 68.5
THA.LOC104813800 Tarenaya hassleriana HOM05D000112 ORTHO05D005753 8.3e-11 70.1 54 64.8
Glyma.14G217700 Glycine max HOM05D000112 ORTHO05D005753 1.8e-10 68.9 54 63.0
Glyma.17G256500 Glycine max HOM05D000112 ORTHO05D005753 1.8e-10 68.9 54 61.1
Lj4C28T5 Lonicera japonica HOM05D000112 ORTHO05D005753 2.4e-10 68.6 54 68.5
unitig_8.g4916 Utricularia gibba HOM05D000112 ORTHO05D005753 2.4e-10 68.6 56 60.7
arahy.Tifrunner.gnm1.ann1.N1Z0FN Arachis hypogaea HOM05D000112 ORTHO05D005753 3.1e-10 68.2 54 68.5
MSTRG.25227 Avicennia marina HOM05D000112 ORTHO05D005753 4.1e-10 67.8 56 66.1
Lj1g0017884 Lotus japonicus HOM05D000112 ORTHO05D005753 4.1e-10 67.8 55 61.8
Gohir.A05G187900 Gossypium hirsutum HOM05D000112 ORTHO05D005753 5.3e-10 67.4 55 63.6
Gohir.D05G190900 Gossypium hirsutum HOM05D000112 ORTHO05D005753 5.3e-10 67.4 55 63.6
TAR625G0794 Trochodendron aralioides HOM05D000112 ORTHO05D005753 5.3e-10 67.4 54 64.8
SalBow8G2227 Salvia bowleyana HOM05D000112 ORTHO05D005753 7.0e-10 67.0 54 64.8
SalBow8G4964 Salvia bowleyana HOM05D000112 ORTHO05D005753 7.0e-10 67.0 54 64.8
Cc10_g01900 Coffea canephora HOM05D000112 ORTHO05D005753 9.1e-10 66.6 54 63.0
Gorai.009G196100 Gossypium raimondii HOM05D000112 ORTHO05D005753 9.1e-10 66.6 55 61.8
Lalb_Chr23g0266231 Lupinus albus HOM05D000112 ORTHO05D005753 9.1e-10 66.6 54 63.0
CSS0001727 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D005753 1.2e-09 66.2 54 64.8
arahy.Tifrunner.gnm1.ann1.B09RYD Arachis hypogaea HOM05D000112 ORTHO05D005753 1.6e-09 65.9 53 67.9
Thhalv10006748m.g Eutrema salsugineum HOM05D000112 ORTHO05D005753 2.0e-09 65.5 57 64.9
Actinidia16967 Actinidia chinensis HOM05D000112 ORTHO05D005753 3.5e-09 64.7 54 63.0
Peaxi162Scf00287g00193 Petunia axillaris HOM05D000112 ORTHO05D005753 3.5e-09 64.7 54 66.7
Sp1g17650 Schrenkiella parvula HOM05D000112 ORTHO05D005753 4.5e-09 64.3 57 63.2
PGR031G3443 Punica granatum HOM05D000112 ORTHO05D005753 5.9e-09 63.9 55 58.2
Carub.0001s1937 Capsella rubella HOM05D000112 ORTHO05D005753 1.0e-08 63.2 57 63.2
Psat6g004320 Pisum sativum HOM05D000112 ORTHO05D005753 1.0e-08 63.2 53 64.2
Rhsim06G0023400 Rhododendron simsii HOM05D000112 ORTHO05D005753 1.0e-08 63.2 48 66.7
vmacro21712 Vaccinium macrocarpon HOM05D000112 ORTHO05D005753 1.0e-08 63.2 48 66.7
Nn6g32307 Nelumbo nucifera HOM05D000112 ORTHO05D005753 1.3e-08 62.8 53 58.5
Medtr1g024025 Medicago truncatula HOM05D000112 ORTHO05D005753 1.7e-08 62.4 60 58.3
AL1G32580 Arabidopsis lyrata HOM05D000112 ORTHO05D005753 2.2e-08 62.0 57 61.4
Ca_13406_v3 Cicer arietinum L. HOM05D000112 ORTHO05D005753 2.2e-08 62.0 53 62.3
HanXRQChr08g0234951 Helianthus annuus HOM05D000112 ORTHO05D005753 2.2e-08 62.0 55 65.5
Lsat_1_v5_gn_2_12381 Lactuca sativa HOM05D000112 ORTHO05D005753 2.2e-08 62.0 56 64.3
TAR625G0449 Trochodendron aralioides HOM05D000112 ORTHO05D005753 2.2e-08 62.0 56 57.1
Sc02g0008450 Simmondsia chinensis HOM05D000112 ORTHO05D005753 2.9e-08 61.6 54 64.8
SGA_v2.0_scaffold11G05891 Striga asiatica HOM05D000112 ORTHO05D005753 2.9e-08 61.6 53 60.4
Lj5g0026835 Lotus japonicus HOM05D000112 ORTHO05D005753 3.8e-08 61.2 54 61.1
Lalb_Chr14g0369771 Lupinus albus HOM05D000112 ORTHO05D005753 3.8e-08 61.2 51 60.8
AT1G19850 Arabidopsis thaliana HOM05D000112 ORTHO05D005753 5.0e-08 60.8 57 61.4
ECA238G1919 Erigeron canadensis HOM05D000112 ORTHO05D005753 6.5e-08 60.5 55 61.8
Actinidia15406 Actinidia chinensis HOM05D000112 ORTHO05D005753 8.5e-08 60.1 54 61.1
MSTRG.22332 Avicennia marina HOM05D000112 ORTHO05D005753 1.5e-07 59.3 54 63.0
HanXRQChr03g0068581 Helianthus annuus HOM05D000112 ORTHO05D005753 1.5e-07 59.3 55 61.8
DCAR_022437 Daucus carota HOM05D000112 ORTHO05D005753 1.9e-07 58.9 54 57.4
AUR62035439 Chenopodium quinoa HOM05D000112 ORTHO05D005753 2.5e-07 58.5 47 66.0
AUR62035726 Chenopodium quinoa HOM05D000112 ORTHO05D005753 2.5e-07 58.5 54 57.4
arahy.Tifrunner.gnm1.ann1.HEXM1C Arachis hypogaea HOM05D000112 ORTHO05D001918 4.2e-07 57.8 54 57.4
arahy.Tifrunner.gnm1.ann1.S8K9LU Arachis hypogaea HOM05D000112 ORTHO05D001918 4.2e-07 57.8 54 57.4
Lalb_Chr22g0354411 Lupinus albus HOM05D000112 ORTHO05D005753 4.2e-07 57.8 45 66.7
TPR.G34351 Trifolium pratense HOM05D000112 ORTHO05D005753 5.5e-07 57.4 53 60.4
CARHR020350 Cardamine hirsuta HOM05D000112 ORTHO05D005753 9.4e-07 56.6 60 53.3
Ah.00g000050 Amaranthus hybridus HOM05D000112 ORTHO05D005753 1.2e-06 56.2 54 57.4
Ah.11g039440 Amaranthus hybridus HOM05D000112 ORTHO05D005753 1.6e-06 55.8 54 55.6
EL10Ac1g02262 Beta vulgaris HOM05D000112 ORTHO05D005753 1.6e-06 55.8 53 54.7
MBI05_g26503_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005753 2.7e-06 55.1 55 54.5
PSO151G0108 Papaver somniferum HOM05D000112 ORTHO05D005753 2.7e-06 55.1 53 60.4
PSO170G3277 Papaver somniferum HOM05D000112 ORTHO05D005753 2.7e-06 55.1 53 60.4
PSO210G7034 Papaver somniferum HOM05D000112 ORTHO05D005753 2.7e-06 55.1 53 60.4
Migut.C00816 Erythranthe guttata HOM05D000112 ORTHO05D005753 3.6e-06 54.7 55 56.4
Hund05215 Selenicereus undatus HOM05D000112 ORTHO05D005753 6.1e-06 53.9 54 55.6
Hund27907 Selenicereus undatus HOM05D000112 ORTHO05D005753 6.1e-06 53.9 54 55.6


User provided reference genes

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