Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.7e-63 246.1 151 100.0
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.2e-55 219.2 124 89.5
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.1e-54 216.9 124 87.9
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.1e-54 216.9 124 87.1
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.4e-54 216.5 124 88.7
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.4e-54 215.7 124 86.3
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 3.2e-54 215.3 124 87.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.2e-54 214.9 124 87.1
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.2e-53 213.4 124 87.9
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.2e-53 213.4 118 91.5
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-53 213.0 124 86.3
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 2.1e-53 212.6 124 86.3
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.7e-53 212.2 118 90.7
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.5e-53 211.8 125 87.2
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 3.5e-53 211.8 124 86.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 6.0e-53 211.1 125 87.2
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.0e-52 210.3 118 91.5
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.0e-52 210.3 118 91.5
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.0e-52 210.3 124 86.3
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.8e-52 209.5 122 88.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.3e-52 209.1 124 83.9
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 2.3e-52 209.1 118 89.8
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.0e-52 208.8 124 85.5
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.0e-52 208.8 124 83.9
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 3.0e-52 208.8 124 85.5
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 3.9e-52 208.4 124 84.7
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 5.1e-52 208.0 124 85.5
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 8.7e-52 207.2 125 85.6
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 8.7e-52 207.2 123 85.4
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.5e-51 206.5 124 83.1
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.5e-51 206.5 125 84.8
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-51 206.1 124 83.9
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 4.3e-51 204.9 125 84.8
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 5.6e-51 204.5 124 80.6
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 7.4e-51 204.1 124 84.7
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 9.6e-51 203.8 124 84.7
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 9.6e-51 203.8 124 83.1
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.6e-50 203.0 124 80.6
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.6e-50 203.0 124 81.5
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 2.1e-50 202.6 124 79.0
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 2.1e-50 202.6 124 80.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.8e-50 202.2 125 82.4
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.8e-50 202.2 124 83.9
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.7e-50 201.8 125 84.0
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.7e-50 201.8 124 84.7
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 6.2e-50 201.1 126 81.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 6.2e-50 201.1 124 82.3
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 6.2e-50 201.1 125 83.2
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-49 200.3 124 81.5
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.1e-49 200.3 131 80.9
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.1e-49 200.3 124 78.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.1e-49 200.3 124 78.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.1e-49 200.3 124 78.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.1e-49 200.3 124 82.3
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.4e-49 199.9 124 79.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.4e-49 199.9 124 79.0
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.8e-49 199.5 124 79.0
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.8e-49 199.5 124 79.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.4e-49 199.1 124 78.2
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 3.1e-49 198.7 122 80.3
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 4.0e-49 198.4 122 85.2
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 4.0e-49 198.4 124 78.2
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.0e-49 198.4 124 80.6
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 5.3e-49 198.0 124 79.8
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.2e-48 196.8 124 80.6
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.4e-48 195.3 124 80.6
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.8e-48 194.5 124 76.6
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.0e-47 193.7 125 78.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.0e-47 193.7 124 77.4
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.3e-47 193.4 124 79.8
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.3e-47 193.4 124 76.6
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.2e-47 192.6 131 74.0
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.8e-47 191.8 124 79.8
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 4.9e-47 191.4 126 77.0
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 6.5e-47 191.0 124 78.2
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.1e-46 190.3 124 76.6
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.4e-46 189.9 142 69.7
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.9e-46 189.5 125 77.6
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.9e-46 189.5 124 75.8
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.5e-46 189.1 124 75.8
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 3.2e-46 188.7 116 78.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 7.1e-46 187.6 124 78.2
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 7.1e-46 187.6 124 73.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 9.3e-46 187.2 125 76.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.3e-46 187.2 100 92.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.2e-45 186.8 139 71.2
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 2.1e-45 186.0 128 75.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.1e-45 186.0 116 77.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 4.6e-45 184.9 116 77.6
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 6.0e-45 184.5 125 76.8
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.8e-44 183.0 125 76.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 5.1e-44 181.4 99 89.9
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 4.3e-43 178.3 122 71.3
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 5.7e-43 177.9 125 75.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 7.4e-43 177.6 124 71.0
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.6e-42 176.4 123 71.5
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.6e-42 176.4 124 72.6
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.8e-42 175.6 125 73.6
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.8e-42 175.6 162 60.5
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 4.8e-42 174.9 126 71.4
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 4.8e-42 174.9 126 71.4
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 4.8e-42 174.9 126 71.4
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 4.8e-42 174.9 124 74.2
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 6.3e-42 174.5 111 76.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 8.2e-42 174.1 125 73.6
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 8.2e-42 174.1 116 71.6
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.1e-41 173.7 124 75.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.4e-41 173.3 127 72.4
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.8e-41 172.9 121 73.6
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.1e-41 172.2 111 75.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.1e-41 172.2 111 75.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.1e-41 172.2 104 83.7
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 3.1e-41 172.2 116 71.6
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 5.3e-41 171.4 165 57.6
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 6.9e-41 171.0 105 80.0
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 9.0e-41 170.6 115 72.2
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 9.0e-41 170.6 115 74.8
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 3.4e-40 168.7 121 71.9
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 3.4e-40 168.7 105 79.0
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.9e-39 165.6 158 58.9
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.8e-39 165.2 154 62.3
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 2.5e-38 162.5 87 92.0
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 6.1e-37 157.9 124 69.4
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.3e-36 156.8 115 71.3
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.7e-36 154.5 87 85.1
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.9e-35 152.9 90 83.3
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 9.7e-35 150.6 96 77.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.6e-34 149.8 115 64.3
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.7e-34 148.7 110 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.7e-34 148.7 121 60.3
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.4e-33 146.7 108 62.0
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 4.1e-33 145.2 124 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.9e-33 144.4 121 58.7
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.1e-33 144.1 109 61.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.2e-32 143.7 81 87.7
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.0e-32 142.9 117 58.1
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.6e-32 142.5 124 64.5
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.8e-31 138.7 90 75.6
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.1e-30 137.1 113 61.9
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 4.2e-30 135.2 101 61.4
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 7.2e-30 134.4 93 72.0
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.2e-29 133.7 96 93.8
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 6.7e-28 127.9 77 81.8
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 2.8e-26 122.5 78 76.9
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.1e-25 120.6 73 78.1
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.4e-25 120.2 77 74.0
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 4.1e-25 118.6 93 68.8
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.2e-22 109.0 63 79.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 7.2e-22 107.8 119 45.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.6e-21 105.5 94 56.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 6.7e-20 101.3 124 50.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.6e-19 99.4 56 83.9
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 6.3e-18 94.7 89 50.6
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.1e-17 94.0 103 41.7
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.5e-16 89.0 52 80.8
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 2.1e-13 79.7 110 40.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 2.7e-13 79.3 47 83.0
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.7e-10 68.9 57 61.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.8e-09 66.6 93 34.4
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 8.5e-07 57.8 33 81.8
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 9.4e-06 54.3 90 27.8


User provided reference genes

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