Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G019700 Prunus persica HOM05D004901 ORTHO05D005592 3.9e-105 384.8 193 100.0
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 1.1e-83 313.5 185 87.6
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 4.1e-54 215.3 186 66.7
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 2.0e-53 213.0 180 70.0
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 1.1e-51 207.2 187 63.1
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 3.0e-49 199.1 187 61.0
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 5.2e-49 198.4 187 62.6
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 8.6e-36 154.5 198 50.5
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 1.2e-34 150.6 213 47.9
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 1.4e-33 147.1 194 51.5
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 3.3e-27 125.9 198 43.9
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 4.3e-27 125.6 190 44.7
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 2.8e-26 122.9 193 45.6
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 8.0e-26 121.3 193 43.5
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 1.8e-25 120.2 195 44.6
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 5.2e-25 118.6 183 44.3
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 1.1e-22 110.9 198 39.9
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 1.4e-22 110.5 189 45.0
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 1.4e-22 110.5 195 42.1
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 4.1e-22 109.0 198 42.9
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.6e-21 107.1 199 43.2
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 9.5e-19 97.8 199 38.7
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 6.2e-18 95.1 188 38.3
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 1.4e-17 94.0 203 37.9
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 1.4e-17 94.0 201 39.8
CSS0042276 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 1.5e-16 90.5 188 40.4
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 1.5e-16 90.5 185 36.8
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 2.0e-16 90.1 199 39.2
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 2.0e-16 90.1 195 37.4
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 2.6e-16 89.7 197 37.6
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 3.4e-16 89.4 197 38.1
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 7.5e-16 88.2 158 41.1
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 1.3e-15 87.4 195 36.4
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 1.3e-15 87.4 187 36.9
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.7e-15 87.0 165 38.8
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 2.2e-15 86.7 187 36.9
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 2.2e-15 86.7 186 38.2
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 2.9e-15 86.3 191 35.1
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 3.7e-15 85.9 184 39.1
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 8.3e-15 84.7 197 36.5
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 1.4e-14 84.0 192 36.5
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 1.4e-14 84.0 205 38.0
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 1.9e-14 83.6 183 39.9
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 4.1e-14 82.4 189 37.0
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 4.1e-14 82.4 192 35.9
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 7.1e-14 81.6 192 35.9
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 9.2e-14 81.3 202 36.6
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 9.2e-14 81.3 185 35.1
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 1.6e-13 80.5 185 36.8
Hma1.2p1_0503F.1_g168030 Hydrangea macrophylla HOM05D004901 ORTHO05D005592 2.1e-13 80.1 189 38.1
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 2.7e-13 79.7 192 33.9
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 4.6e-13 79.0 197 36.0
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 6.0e-13 78.6 191 35.1
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 7.8e-13 78.2 166 37.3
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 7.8e-13 78.2 188 36.2
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 2.3e-12 76.6 194 35.6
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 3.0e-12 76.3 194 34.5
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 3.9e-12 75.9 185 33.0
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 7.3e-11 71.6 190 37.9
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 3.6e-10 69.3 202 35.1
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 8.1e-10 68.2 196 32.1
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 1.4e-09 67.4 200 33.5
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 6.8e-09 65.1 187 34.2
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 1.2e-08 64.3 201 32.3
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 2.6e-08 63.2 200 33.0
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 5.8e-08 62.0 201 34.8
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 2.9e-07 59.7 121 37.2
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 4.9e-07 58.9 146 31.5
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 1.1e-06 57.8 199 31.2
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 1.4e-06 57.4 213 31.5
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 1.9e-06 57.0 201 32.8
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 3.2e-06 56.2 186 33.9
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 4.1e-06 55.8 201 29.9
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 5.4e-06 55.5 201 30.3
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 7.1e-06 55.1 185 31.4


User provided reference genes

Program Settings