Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G536900 Prunus persica HOM05D001240 ORTHO05D002450 4.0e-27 124.0 63 100.0
Prupe.1G537100 Prunus persica HOM05D001240 ORTHO05D002450 1.6e-20 102.1 53 98.1
MD15G1388900 Malus domestica HOM05D001240 ORTHO05D002450 6.1e-15 83.6 53 83.0
RcHm_v2.0_Chr5g0081511 Rosa chinensis HOM05D001240 ORTHO05D002450 5.1e-14 80.5 54 79.6
FAN11G1041 Fragaria x ananassa HOM05D001240 ORTHO05D002450 8.7e-14 79.7 54 79.6
FAN21G1555 Fragaria x ananassa HOM05D001240 ORTHO05D002450 8.7e-14 79.7 54 79.6
CiPaw.13G173000 Carya illinoinensis HOM05D001240 ORTHO05D002450 1.5e-13 79.0 52 76.9
FAN25G3163 Fragaria x ananassa HOM05D001240 ORTHO05D002450 9.7e-13 76.3 54 75.9
Atru.chr3.2254 Acer truncatum HOM05D001240 ORTHO05D002450 1.6e-12 75.5 52 73.1
Gohir.A08G079500 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.6e-12 75.5 52 75.0
Gorai.004G093700 Gossypium raimondii HOM05D001240 ORTHO05D002450 1.6e-12 75.5 52 75.0
MD08G1205100 Malus domestica HOM05D001240 ORTHO05D002450 1.6e-12 75.5 53 77.4
Haze_22986 Corylus avellana HOM05D001240 ORTHO05D002450 3.7e-12 74.3 52 75.0
Gohir.D08G089100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 3.7e-12 74.3 52 73.1
Ciclev10014206m.g Citrus clementina HOM05D001240 ORTHO05D002450 4.8e-12 73.9 52 71.2
Sc01g0000800 Simmondsia chinensis HOM05D001240 ORTHO05D002450 4.8e-12 73.9 52 75.0
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 6.3e-12 73.6 52 71.2
Duzib150G0082 Durio zibethinus HOM05D001240 ORTHO05D002450 8.2e-12 73.2 52 75.0
CsaV3_4G023460 Cucumis sativus L. HOM05D001240 ORTHO05D002450 1.4e-11 72.4 52 71.2
DCAR_001994 Daucus carota HOM05D001240 ORTHO05D002450 1.4e-11 72.4 52 71.2
Potri.001G008800 Populus trichocarpa HOM05D001240 ORTHO05D002450 1.4e-11 72.4 52 71.2
Cfa009612 Carpinus fangiana HOM05D001240 ORTHO05D002450 2.4e-11 71.6 52 73.1
Hma1.2p1_0972F.1_g242820 Hydrangea macrophylla HOM05D001240 ORTHO05D002450 2.4e-11 71.6 52 71.2
Manes.15G105500 Manihot esculenta HOM05D001240 ORTHO05D002450 2.4e-11 71.6 52 69.2
TWI34G1236 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 2.4e-11 71.6 52 67.3
CSS0000015 Camellia sinensis var. sinensis HOM05D001240 ORTHO05D002450 4.1e-11 70.9 52 73.1
ClCG02G023890 Citrullus lanatus HOM05D001240 ORTHO05D002450 4.1e-11 70.9 52 67.3
Rhsim01G0185500 Rhododendron simsii HOM05D001240 ORTHO05D002450 4.1e-11 70.9 52 73.1
Hund26987 Selenicereus undatus HOM05D001240 ORTHO05D002450 4.1e-11 70.9 52 71.2
MELO3C014670.2 Cucumis melo HOM05D001240 ORTHO05D002450 1.5e-10 68.9 52 65.4
Lj2C713G1 Lonicera japonica HOM05D001240 ORTHO05D002450 2.0e-10 68.6 52 71.2
AUR62027811 Chenopodium quinoa HOM05D001240 ORTHO05D002450 2.6e-10 68.2 52 69.2
Sed0019139 Sechium edule HOM05D001240 ORTHO05D002450 4.5e-10 67.4 52 63.5
Nn7g35936 Nelumbo nucifera HOM05D001240 ORTHO05D002450 5.9e-10 67.0 52 71.2
GSVIVG01025404001 Vitis vinifera HOM05D001240 ORTHO05D002450 1.0e-09 66.2 52 67.3
AUR62018970 Chenopodium quinoa HOM05D001240 ORTHO05D002450 1.7e-09 65.5 52 65.4
QL01p007971 Quercus lobata HOM05D001240 ORTHO05D002450 1.7e-09 65.5 49 67.3
TAR633G0029 Trochodendron aralioides HOM05D001240 ORTHO05D002450 1.7e-09 65.5 52 67.3
TAR633G1852 Trochodendron aralioides HOM05D001240 ORTHO05D002450 1.7e-09 65.5 52 67.3
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 3.8e-09 64.3 52 65.4
Peaxi162Scf00100g00714 Petunia axillaris HOM05D001240 ORTHO05D002450 5.0e-09 63.9 52 67.3
Ah.05g169680 Amaranthus hybridus HOM05D001240 ORTHO05D002450 1.1e-08 62.8 52 65.4
Solyc01g006040.3 Solanum lycopersicum HOM05D001240 ORTHO05D002450 1.1e-08 62.8 52 67.3
Sopen01g002040 Solanum pennellii HOM05D001240 ORTHO05D002450 1.1e-08 62.8 52 67.3
ATR0598G081 Amborella trichopoda HOM05D001240 ORTHO05D002450 1.4e-08 62.4 52 57.7
Nitab4.5_0011368g0020 Nicotiana tabacum HOM05D001240 ORTHO05D002450 1.4e-08 62.4 52 65.4
Nitab4.5_0000775g0150 Nicotiana tabacum HOM05D001240 ORTHO05D002450 1.9e-08 62.0 52 65.4
Actinidia16266 Actinidia chinensis HOM05D001240 ORTHO05D002450 2.5e-08 61.6 52 63.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.5e-08 61.6 38 78.9
Glyma.14G050200 Glycine max HOM05D001240 ORTHO05D002450 2.5e-08 61.6 50 64.0
vmacro03817 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 4.2e-08 60.8 38 81.6
Aqoxy1G00066 Aquilegia oxysepala HOM05D001240 ORTHO05D002450 1.6e-07 58.9 52 65.4
EL10Ac1g01148 Beta vulgaris HOM05D001240 ORTHO05D002450 1.6e-07 58.9 38 73.7
SGA_v2.0_scaffold6G03439 Striga asiatica HOM05D001240 ORTHO05D002450 2.7e-07 58.2 42 66.7
Cc01_g01540 Coffea canephora HOM05D001240 ORTHO05D002450 3.6e-07 57.8 42 66.7
Phvul.008G214800 Phaseolus vulgaris HOM05D001240 ORTHO05D002450 3.6e-07 57.8 51 58.8
VMungo0647G1617 Vigna mungo HOM05D001240 ORTHO05D002450 4.6e-07 57.4 51 58.8
Lsat_1_v5_gn_6_52501 Lactuca sativa HOM05D001240 ORTHO05D002450 6.1e-07 57.0 52 61.5
Ca_06053_v3 Cicer arietinum L. HOM05D001240 ORTHO05D002450 7.9e-07 56.6 52 55.8
Glyma.02G267300 Glycine max HOM05D001240 ORTHO05D002450 1.0e-06 56.2 50 58.0
Thecc.09G213500 Theobroma cacao HOM05D001240 ORTHO05D002450 1.0e-06 56.2 52 59.6
MBI13_g29634_MAGBIO Magnolia biondii HOM05D001240 ORTHO05D002450 1.4e-06 55.8 52 59.6
MSTRG.20952 Avicennia marina HOM05D001240 ORTHO05D002450 1.8e-06 55.5 41 68.3
HanXRQChr13g0404141 Helianthus annuus HOM05D001240 ORTHO05D002450 1.8e-06 55.5 52 63.5
Aa31LG10G1020 Aethionema arabicum HOM05D001240 ORTHO05D002450 2.3e-06 55.1 52 55.8
Migut.D02533 Erythranthe guttata HOM05D001240 ORTHO05D002450 2.3e-06 55.1 41 65.9
Thhalv10011229m.g Eutrema salsugineum HOM05D001240 ORTHO05D002450 2.3e-06 55.1 52 59.6
ECA233G3012 Erigeron canadensis HOM05D001240 ORTHO05D002450 3.9e-06 54.3 53 58.5
AL1G63290 Arabidopsis lyrata HOM05D001240 ORTHO05D002450 5.1e-06 53.9 52 59.6
Medtr1g068830 Medicago truncatula HOM05D001240 ORTHO05D002450 6.7e-06 53.5 49 55.1
PSO339G1017 Papaver somniferum HOM05D001240 ORTHO05D002450 6.7e-06 53.5 52 55.8
PSO384G2650 Papaver somniferum HOM05D001240 ORTHO05D002450 6.7e-06 53.5 52 55.8
arahy.Tifrunner.gnm1.ann1.4D4R47 Arachis hypogaea HOM05D001240 ORTHO05D002450 8.8e-06 53.1 51 54.9
Medtr5g085010 Medicago truncatula HOM05D001240 ORTHO05D002450 8.8e-06 53.1 52 51.9


User provided reference genes

Program Settings