Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.2e-112 409.1 220 100.0
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.1e-111 406.8 220 99.1
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 4.9e-104 381.3 217 90.8
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 6.4e-104 380.9 217 90.3
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.6e-102 376.3 217 89.9
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.1e-102 375.9 217 89.4
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.7e-102 375.6 217 90.3
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.8e-102 374.0 217 87.1
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.3e-101 373.2 217 88.9
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 3.9e-101 371.7 217 86.2
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 88.0
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 88.0
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 88.0
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 88.0
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 88.0
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 5.1e-101 371.3 217 87.1
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 6.6e-101 370.9 214 89.3
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 6.6e-101 370.9 217 87.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.1e-100 370.2 217 88.0
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.5e-100 369.8 217 87.6
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-100 369.4 214 88.8
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.9e-100 369.4 217 87.6
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.9e-100 369.4 202 91.6
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.3e-100 368.6 214 87.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.6e-100 367.9 213 87.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.3e-99 366.7 217 86.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.6e-99 366.3 217 88.9
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.1e-99 365.9 217 87.1
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.1e-99 365.9 202 91.1
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.1e-99 365.9 213 86.4
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.8e-99 365.5 202 91.1
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 3.6e-99 365.2 217 83.4
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 3.6e-99 365.2 217 82.9
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 4.8e-99 364.8 217 85.3
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 6.2e-99 364.4 217 84.3
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 6.2e-99 364.4 217 87.6
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 6.2e-99 364.4 217 84.3
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 8.1e-99 364.0 202 89.1
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.1e-98 363.6 217 85.7
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.1e-98 363.6 217 87.1
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.4e-98 363.2 217 82.0
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.4e-98 363.2 219 87.2
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.4e-98 363.2 217 82.5
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.8e-98 362.8 214 85.0
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.8e-98 362.8 217 83.4
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.4e-98 362.5 217 82.5
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 2.4e-98 362.5 217 85.7
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 4.0e-98 361.7 214 84.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 4.0e-98 361.7 214 84.6
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 4.0e-98 361.7 217 85.7
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 9.0e-98 360.5 217 82.0
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.5e-97 359.8 214 86.4
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 82.5
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.0e-97 359.4 217 82.9
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 3.4e-97 358.6 202 88.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 5.8e-97 357.8 217 82.0
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 7.6e-97 357.5 217 83.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 3.8e-96 355.1 214 81.8
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.8e-96 355.1 217 83.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 83.9
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.2e-95 352.1 220 86.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.2e-95 351.7 208 87.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 5.4e-95 351.3 217 81.6
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 9.3e-95 350.5 206 86.9
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 2.1e-94 349.4 217 81.1
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.7e-94 349.0 214 80.8
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.7e-94 349.0 214 80.8
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 6.0e-94 347.8 217 79.3
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 6.0e-94 347.8 217 81.6
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 6.0e-94 347.8 223 78.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 6.0e-94 347.8 214 80.4
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.0e-93 347.1 217 81.1
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 2.3e-93 345.9 217 83.9
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 6.6e-93 344.4 206 84.5
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 4.3e-92 341.7 217 80.2
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.6e-91 339.7 204 82.8
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 4.8e-91 338.2 206 80.6
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 6.2e-91 337.8 205 81.5
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.1e-91 337.4 293 64.8
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.1e-90 337.0 217 76.0
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 1.4e-90 336.7 205 81.5
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-90 336.7 206 80.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 4.0e-90 335.1 218 79.8
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 6.9e-90 334.3 218 79.8
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 6.9e-90 334.3 218 79.8
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 6.9e-90 334.3 217 76.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 9.0e-90 334.0 218 79.8
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 9.0e-90 334.0 218 79.8
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 9.0e-90 334.0 202 83.2
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.4e-89 332.0 217 74.7
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 7.6e-89 330.9 218 79.4
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.3e-88 330.1 196 84.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.1e-87 327.0 217 75.1
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.4e-87 325.9 212 79.2
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.2e-86 323.6 210 79.5
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.6e-86 323.2 217 74.2
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.6e-86 323.2 202 77.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.0e-86 321.2 201 76.6
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 6.7e-85 317.8 218 72.9
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.9e-84 316.2 218 72.5
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 3.3e-84 315.5 276 62.0
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.3e-84 315.5 217 74.7
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 4.3e-84 315.1 214 76.6
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-83 313.5 218 72.0
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.3e-83 313.5 202 73.3
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.1e-79 300.4 185 81.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.2e-78 297.0 201 76.1
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 6.0e-78 294.7 185 82.2
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.3e-77 292.7 164 87.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 3.9e-77 292.0 173 83.8
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 9.0e-74 280.8 170 82.9
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.3e-69 266.2 202 65.3
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 3.9e-69 265.4 217 58.5
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 6.3e-67 258.1 202 63.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 6.9e-66 254.6 217 68.2
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 4.4e-60 235.3 139 84.2
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.7e-59 233.4 202 58.4
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 2.8e-59 232.6 144 81.2
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-56 223.0 175 70.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.2e-55 219.2 212 56.1
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.2e-54 217.2 144 77.8
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 9.7e-52 207.6 125 84.8
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.3e-51 207.2 137 78.8
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.3e-51 207.2 110 91.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 2.7e-46 189.5 214 50.5
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.4e-42 176.4 162 56.2
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 5.9e-41 171.8 177 53.7
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 4.1e-34 149.1 218 43.6
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.6e-30 137.1 90 80.0
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.2e-28 131.0 83 78.3
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 6.6e-24 115.2 80 81.2
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 4.6e-17 92.4 56 76.8
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.3e-16 90.1 45 95.6
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 5.0e-16 89.0 46 87.0
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 2.5e-15 86.7 53 71.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.0e-12 77.0 99 49.5
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 3.2e-10 69.7 65 58.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.3e-08 63.5 34 91.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 6.6e-08 62.0 34 91.2


User provided reference genes

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