Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1463.0 725 100.0
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1321.2 725 89.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1234.6 725 84.3
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1234.2 725 84.3
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1223.8 725 83.6
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1209.5 736 81.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1178.3 725 79.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1158.3 726 78.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1155.6 726 77.5
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1153.7 724 77.6
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1149.4 719 76.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1140.6 725 76.0
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1139.4 725 75.7
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1139.0 712 76.7
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1138.3 722 76.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1124.0 719 76.4
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1123.2 711 75.8
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1116.3 730 74.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1115.5 725 75.7
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1107.0 725 75.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1105.9 725 75.3
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1103.2 725 75.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1083.6 725 74.5
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 8.3e-310 1066.6 721 72.3
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 3.5e-308 1061.2 732 73.0
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.3e-307 1058.5 729 70.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.5e-306 1055.8 726 70.2
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.3e-306 1054.3 729 70.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 4.3e-306 1054.3 710 70.7
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 4.3e-306 1054.3 718 71.9
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.2e-305 1052.7 705 72.2
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.6e-305 1052.4 708 71.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 6.2e-305 1050.4 708 71.0
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.4e-304 1049.3 715 71.6
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 6.9e-304 1047.0 715 71.6
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.6e-303 1045.0 705 71.9
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.6e-303 1043.5 730 70.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 9.9e-303 1043.1 727 71.1
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-302 1042.7 710 71.1
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.9e-302 1041.6 725 69.8
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.9e-301 1038.9 724 68.5
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 2.4e-301 1038.5 725 69.2
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.2e-301 1038.1 710 71.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.5e-300 1034.6 731 68.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 4.6e-300 1034.2 667 75.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 725 70.8
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.3e-299 1032.7 632 79.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.3e-299 1031.9 724 68.4
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 6.6e-299 1030.4 724 68.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 9.6e-298 1026.5 727 68.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 730 69.2
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 4.8e-297 1024.2 725 68.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.1e-296 1021.5 726 67.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 6.9e-296 1020.4 725 68.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 727 69.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.5e-295 1019.2 725 68.0
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 724 67.8
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 711 69.8
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 7.6e-295 1016.9 731 70.0
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 724 67.7
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.9e-294 1015.0 724 68.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.9e-294 1014.2 709 68.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 8.4e-294 1013.4 725 67.3
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-293 1013.1 708 68.5
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 718 68.0
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 6.0e-292 1007.3 708 68.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 9.6e-290 1000.0 695 70.2
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 9.9e-287 989.9 662 72.2
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 1.3e-286 989.6 714 69.2
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.2e-286 988.8 741 64.9
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 4.9e-286 987.6 737 65.3
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.2e-285 984.9 727 67.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 2.7e-284 981.9 727 66.6
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 2.5e-282 975.3 735 65.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.7e-278 962.6 711 67.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.7e-276 955.3 993 53.8
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 3.5e-276 954.9 630 72.4
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 7.9e-276 953.7 734 65.5
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.0e-275 953.4 736 63.2
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.9e-275 951.4 696 68.2
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.5e-274 949.5 719 64.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 5.7e-274 947.6 629 73.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 6.5e-270 934.1 625 72.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 3.2e-269 931.8 728 64.4
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-268 929.9 664 68.7
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 3.6e-268 928.3 720 62.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 2.8e-265 918.7 592 74.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.4e-264 915.6 542 80.8
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 9.4e-261 903.7 706 61.9
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.0e-259 898.7 589 71.6
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.8e-257 891.3 740 59.5
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 3.0e-251 872.1 568 72.4
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 6.3e-249 864.4 859 53.2
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 6.1e-244 847.8 720 60.3
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.9e-238 828.9 987 49.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.0e-219 765.8 724 56.9
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.2e-204 717.2 453 76.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.4e-184 649.8 490 65.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.6e-181 638.6 728 45.5
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.4e-171 606.7 703 44.4
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 2.8e-164 583.2 363 76.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 3.3e-157 559.7 660 45.3
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.0e-149 533.9 452 59.3
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 2.2e-145 520.4 384 65.6
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 3.7e-108 396.7 263 67.3
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 8.0e-103 379.0 226 82.7
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 5.0e-97 359.8 252 69.4
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.7e-90 337.4 262 63.7
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 8.3e-84 315.8 291 56.4
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.6e-71 273.9 167 82.6
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 5.3e-70 270.0 272 51.5
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.8e-63 247.7 150 72.7
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.6e-48 196.1 274 43.1
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.3e-41 175.6 273 39.6
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 8.7e-41 172.9 154 59.7
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.7e-40 169.5 232 43.1
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 3.0e-33 147.9 107 72.9
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-31 142.1 112 59.8
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.8e-30 138.7 138 57.2
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.5e-27 128.3 156 44.9
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 4.2e-27 127.5 119 55.5
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.6e-26 125.6 93 66.7
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.7e-26 124.8 83 68.7
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-25 122.9 115 56.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-25 120.2 169 36.1
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 6.7e-25 120.2 98 59.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 7.4e-24 116.7 83 65.1
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.7e-23 115.5 66 77.3
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.1e-22 110.9 61 80.3
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.0e-21 108.6 101 54.5
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 7.7e-21 106.7 104 56.7
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 7.7e-21 106.7 109 50.5
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.5e-19 101.7 74 71.6
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.6e-18 99.0 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 4.7e-18 97.4 109 47.7
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-16 92.4 78 61.5
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.2e-15 88.6 70 64.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 3.7e-15 87.8 168 33.9
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 6.3e-15 87.0 65 66.2
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 6.3e-15 87.0 129 40.3
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 7.7e-13 80.1 70 55.7
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-12 79.0 93 43.0
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 5.0e-12 77.4 58 56.9
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 8.5e-12 76.6 48 79.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.5e-11 75.9 54 63.0
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 2.5e-11 75.1 57 63.2
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 4.2e-11 74.3 53 71.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 9.4e-11 73.2 57 61.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 9.4e-11 73.2 57 61.4
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.1e-10 70.5 57 61.4
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 8.8e-09 66.6 56 58.9
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.5e-08 65.9 51 62.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 9.8e-08 63.2 104 41.3
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 3.1e-06 58.2 46 56.5


User provided reference genes

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