Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.4e-209 732.6 352 100.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 6.5e-199 697.2 352 95.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 2.6e-192 675.2 352 92.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.4e-188 662.9 352 89.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 3.3e-187 658.3 352 89.2
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 9.7e-187 656.8 352 88.9
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 8.2e-186 653.7 352 88.6
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 6.9e-185 650.6 352 86.4
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.2e-184 649.8 352 86.4
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.0e-183 646.7 352 84.4
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 5.5e-182 641.0 351 84.6
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 3.6e-181 638.3 352 83.5
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 6.1e-181 637.5 354 85.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 8.8e-180 633.6 352 83.2
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.0e-179 632.5 352 84.1
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.6e-179 632.1 352 83.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 4.4e-179 631.3 352 84.1
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.8e-178 628.6 352 82.7
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.7e-178 628.2 352 83.8
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 3.7e-178 628.2 352 81.0
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.3e-178 627.5 352 83.5
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.4e-177 626.3 352 82.4
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 4.1e-177 624.8 353 82.4
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 9.1e-177 623.6 350 81.4
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.2e-176 623.2 350 80.9
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.0e-176 622.5 352 83.0
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 4.5e-176 621.3 339 85.3
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 5.9e-176 620.9 361 80.9
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.7e-175 619.4 350 80.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.9e-175 618.6 352 80.1
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 3.2e-174 615.1 352 79.8
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 3.2e-174 615.1 352 82.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 5.5e-174 614.4 350 80.3
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.2e-174 614.0 358 82.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 7.2e-174 614.0 352 81.5
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 9.4e-174 613.6 350 79.7
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 9.4e-174 613.6 352 81.5
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 2.7e-173 612.1 351 82.1
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.0e-172 610.1 339 82.3
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 3.0e-172 608.6 355 81.7
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 6.7e-172 607.4 350 79.4
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 6.7e-172 607.4 350 79.4
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 4.4e-171 604.7 352 80.4
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 7.4e-171 604.0 355 78.0
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.7e-170 602.8 352 80.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 2.2e-170 602.4 350 79.7
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.8e-170 602.1 352 79.5
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 3.7e-170 601.7 350 77.1
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 4.8e-170 601.3 338 81.7
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 4.8e-170 601.3 352 80.4
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.4e-169 599.0 350 78.3
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 4.1e-169 598.2 352 79.0
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.0e-169 597.4 352 77.6
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.3e-167 593.2 352 77.0
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 5.0e-167 591.3 339 81.4
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.5e-166 589.7 338 81.4
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 78.7
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 7.2e-166 587.4 352 76.4
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 9.4e-166 587.0 351 79.5
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.6e-165 586.3 319 83.7
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.7e-165 585.5 374 75.1
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 3.6e-165 585.1 352 76.7
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 4.7e-165 584.7 351 77.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 2.3e-164 582.4 347 76.1
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 6.8e-164 580.9 352 76.7
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.8e-164 580.9 352 76.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 77.0
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 77.0
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 8.8e-164 580.5 353 76.8
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.0e-163 579.3 352 77.3
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 76.4
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 3.7e-162 575.1 352 75.3
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 6.3e-162 574.3 352 76.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.3e-162 573.9 319 83.1
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.1e-161 573.5 340 78.8
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.4e-161 572.4 352 76.1
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 7.7e-160 567.4 350 75.1
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.2e-159 565.8 352 75.3
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.2e-159 565.8 352 75.3
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 6.5e-159 564.3 352 74.1
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 3.2e-158 562.0 352 75.0
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 7.2e-158 560.8 352 75.0
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.2e-157 560.1 339 75.5
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 74.7
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.4e-156 556.6 352 75.0
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.4e-155 552.0 319 80.9
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.4e-153 546.6 352 69.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 3.1e-153 545.4 383 69.2
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 5.4e-153 544.7 338 76.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 9.1e-153 543.9 352 72.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 4.5e-152 541.6 408 63.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-151 539.7 352 73.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.2e-149 533.5 338 69.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.1e-149 532.7 307 80.1
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-146 523.1 346 71.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.0e-144 516.2 295 80.0
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 5.9e-144 514.6 296 79.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 5.9e-144 514.6 296 79.4
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.9e-143 512.3 319 73.0
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.3e-142 508.8 353 66.0
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.7e-138 495.4 353 64.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.2e-137 492.3 319 73.0
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 7.8e-136 487.6 269 82.2
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 8.1e-133 477.6 296 74.7
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.1e-132 477.2 353 62.0
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.1e-132 475.7 306 72.9
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 3.1e-132 475.7 323 70.3
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.3e-130 470.3 396 60.1
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.2e-130 469.5 255 83.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.9e-127 458.8 263 81.7
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.7e-119 433.3 353 62.6
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 4.9e-114 415.2 223 87.4
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.0e-99 366.7 201 84.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 5.3e-92 342.0 180 87.2
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 5.5e-89 332.0 232 63.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.5e-88 329.3 203 73.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.8e-87 327.0 358 43.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 2.1e-85 320.1 353 41.6
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.3e-84 315.5 212 70.8
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.5e-78 296.6 158 83.5
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.6e-75 286.6 355 40.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 8.8e-71 271.6 199 65.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-58 230.7 144 72.9
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.6e-56 223.0 364 32.1
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.7e-54 215.7 126 77.8
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 8.2e-53 211.8 127 81.9
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 7.5e-46 188.7 108 78.7
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.5e-46 188.7 129 68.2
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.3e-42 177.9 87 95.4
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.2e-40 171.4 226 42.5
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.6e-32 144.4 306 28.4
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 5.4e-28 129.4 76 80.3
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.0e-26 122.9 82 63.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.5e-25 120.6 72 69.4
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-24 118.2 69 75.4
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.7e-24 116.3 70 72.9
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 4.9e-21 106.3 216 29.6
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 3.3e-17 93.6 359 22.6
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.3e-15 87.4 149 36.9
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.3e-15 87.4 58 67.2
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 8.9e-15 85.5 121 42.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.4e-14 83.6 54 77.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.8e-14 82.8 44 84.1
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.4e-12 76.3 170 25.9
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 1.2e-11 75.1 321 22.7
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.3e-10 71.6 165 24.8
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.7e-10 71.2 71 39.4
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 2.3e-10 70.9 332 21.1
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.9e-10 70.1 42 69.0
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 8.6e-10 68.9 262 22.5
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.9e-09 67.8 72 48.6
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 5.6e-09 66.2 171 25.7
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 7.3e-09 65.9 157 26.8
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 7.3e-09 65.9 144 25.0
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.2e-08 65.1 148 27.0
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.6e-08 64.7 41 63.4
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 1.6e-08 64.7 149 26.2
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.6e-08 64.7 169 33.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.6e-08 64.7 49 69.4
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.1e-08 64.3 149 26.2
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 2.1e-08 64.3 146 26.7
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 3.6e-08 63.5 220 21.4
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.1e-07 62.0 148 28.4
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 1.4e-07 61.6 215 25.1
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 2.3e-07 60.8 148 25.0
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.3e-07 60.8 148 25.0
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 2.3e-07 60.8 178 24.7
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 4.0e-07 60.1 121 30.6
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 148 24.3
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 148 24.3
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.2e-07 59.7 32 81.2
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 1.2e-06 58.5 262 20.6
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 2.0e-06 57.8 109 26.6
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 2.0e-06 57.8 214 22.0
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.0e-06 57.8 46 54.3
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.6e-06 57.4 148 25.0
Solyc02g078000.2 Solanum lycopersicum HOM05D000836 ORTHO05D000709 3.4e-06 57.0 105 31.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 5.8e-06 56.2 180 21.1
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 7.6e-06 55.8 113 31.0
LjContig00016g0007772 Lotus japonicus HOM05D001978 ORTHO05D003036 7.6e-06 55.8 127 26.0
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 7.6e-06 55.8 127 26.0
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 9.9e-06 55.5 155 27.1
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 9.9e-06 55.5 138 24.6
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 9.9e-06 55.5 138 24.6
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 9.9e-06 55.5 204 26.5


User provided reference genes

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