Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G187500 Prunus persica HOM05D000324 ORTHO05D004875 3.4e-118 428.3 216 100.0
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 7.5e-57 224.6 126 91.3
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 1.2e-54 217.2 126 85.7
QL06p026611 Quercus lobata HOM05D000324 ORTHO05D004875 2.1e-54 216.5 127 85.8
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 2.7e-54 216.1 125 88.0
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 6.0e-54 214.9 126 84.9
FAN12G0788 Fragaria x ananassa HOM05D000324 ORTHO05D004875 6.0e-54 214.9 125 88.0
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 1.3e-53 213.8 126 85.7
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 8.6e-53 211.1 125 86.4
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 1.1e-52 210.7 129 82.9
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 1.5e-52 210.3 125 84.0
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.5e-52 210.3 126 82.5
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 1.9e-52 209.9 126 84.1
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 1.9e-52 209.9 125 85.6
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 4.3e-52 208.8 126 82.5
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 7.3e-52 208.0 128 82.8
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 7.3e-52 208.0 126 82.5
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 9.5e-52 207.6 126 84.1
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 9.5e-52 207.6 126 80.2
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 9.5e-52 207.6 125 84.8
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 1.2e-51 207.2 126 83.3
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 1.6e-51 206.8 126 83.3
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 2.1e-51 206.5 126 81.7
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 2.1e-51 206.5 124 84.7
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 2.8e-51 206.1 126 84.1
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 3.6e-51 205.7 126 80.2
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 4.7e-51 205.3 124 81.5
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 4.7e-51 205.3 126 83.3
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 6.2e-51 204.9 126 83.3
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 8.1e-51 204.5 126 81.0
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 1.1e-50 204.1 125 80.8
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 1.1e-50 204.1 126 81.0
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 1.1e-50 204.1 126 78.6
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 1.4e-50 203.8 126 81.0
Gorai.009G349600 Gossypium raimondii HOM05D000324 ORTHO05D004875 1.8e-50 203.4 126 78.6
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 2.3e-50 203.0 126 81.7
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 4.0e-50 202.2 126 81.0
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 5.2e-50 201.8 125 83.2
Cpa.g.sc157.34 Carica papaya HOM05D000324 ORTHO05D004875 6.8e-50 201.4 126 80.2
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 6.8e-50 201.4 126 82.5
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 6.8e-50 201.4 126 79.4
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 6.8e-50 201.4 126 81.0
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 8.9e-50 201.1 126 81.7
FAN12G1738 Fragaria x ananassa HOM05D000324 ORTHO05D004875 8.9e-50 201.1 126 81.7
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 1.2e-49 200.7 125 81.6
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.5e-49 200.3 126 81.7
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.5e-49 200.3 126 77.0
SalBow8G0037 Salvia bowleyana HOM05D000324 ORTHO05D004875 1.5e-49 200.3 127 76.4
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 1.5e-49 200.3 126 81.0
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 2.0e-49 199.9 126 79.4
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 2.6e-49 199.5 126 78.6
PGSC0003DMG400020593 Solanum tuberosum HOM05D000324 ORTHO05D004875 2.6e-49 199.5 124 78.2
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 3.4e-49 199.1 126 79.4
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 5.8e-49 198.4 126 77.0
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 9.9e-49 197.6 126 78.6
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 2.9e-48 196.1 126 75.4
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.9e-48 196.1 128 75.8
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 2.9e-48 196.1 126 76.2
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 4.9e-48 195.3 126 78.6
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 6.4e-48 194.9 126 78.6
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 6.4e-48 194.9 126 77.0
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 1.1e-47 194.1 126 76.2
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 1.4e-47 193.7 128 75.0
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 1.4e-47 193.7 124 76.6
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.4e-47 193.7 126 77.8
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 2.4e-47 193.0 126 73.8
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 3.2e-47 192.6 126 77.8
Lj6g0003386 Lotus japonicus HOM05D000324 ORTHO05D004875 5.4e-47 191.8 126 73.8
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 5.4e-47 191.8 126 75.4
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 7.1e-47 191.4 126 75.4
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 7.1e-47 191.4 126 77.8
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 9.2e-47 191.0 128 73.4
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 9.2e-47 191.0 126 75.4
Sabra17G0053900 Salix brachista HOM05D000324 ORTHO05D004875 9.2e-47 191.0 155 67.1
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 1.6e-46 190.3 126 73.8
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 1.6e-46 190.3 125 76.0
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 2.1e-46 189.9 130 73.1
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 4.6e-46 188.7 127 74.8
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 4.6e-46 188.7 125 75.2
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 4.6e-46 188.7 126 76.2
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 6.0e-46 188.3 126 73.0
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 7.8e-46 188.0 127 74.0
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 7.8e-46 188.0 126 73.0
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 7.8e-46 188.0 128 72.7
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 7.8e-46 188.0 126 73.8
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 1.7e-45 186.8 127 72.4
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 2.3e-45 186.4 127 72.4
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 3.0e-45 186.0 127 73.2
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 6.6e-45 184.9 128 75.0
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 6.6e-45 184.9 126 72.2
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 8.6e-45 184.5 126 72.2
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 1.5e-44 183.7 127 71.7
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.5e-44 183.7 127 71.7
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 1.9e-44 183.3 127 71.7
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 1.9e-44 183.3 126 73.0
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 2.5e-44 183.0 127 70.9
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 2.5e-44 183.0 127 70.9
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 2.5e-44 183.0 127 70.9
CDE05G1202 Ceratophyllum demersum HOM05D000324 ORTHO05D004875 2.5e-44 183.0 125 70.4
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 2.5e-44 183.0 126 74.6
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 2.5e-44 183.0 128 70.3
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 4.3e-44 182.2 127 70.1
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 5.6e-44 181.8 128 69.5
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 5.6e-44 181.8 128 72.7
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 5.6e-44 181.8 126 71.4
BraA03t13473Z Brassica rapa HOM05D000324 ORTHO05D004875 7.3e-44 181.4 127 70.1
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 1.6e-43 180.3 127 70.1
Hund24430 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.1e-43 179.9 126 70.6
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 2.8e-43 179.5 127 70.9
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 3.6e-43 179.1 161 60.9
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 4.7e-43 178.7 127 73.2
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 1.4e-42 177.2 156 61.5
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 1.8e-42 176.8 126 71.4
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 2.4e-42 176.4 126 71.4
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 2.4e-42 176.4 126 71.4
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 3.1e-42 176.0 126 71.4
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 3.1e-42 176.0 126 71.4
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 5.2e-42 175.3 126 70.6
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 2.0e-41 173.3 126 68.3
Zm00001eb064380 Zea mays HOM05D000324 ORTHO05D004875 4.4e-41 172.2 126 67.5
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 7.6e-41 171.4 126 67.5
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 7.6e-41 171.4 127 70.9
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 2.2e-40 169.9 126 69.0
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 2.2e-40 169.9 126 69.0
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 2.9e-40 169.5 126 65.1
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 2.9e-40 169.5 126 65.1
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 1.1e-39 167.5 126 65.9
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 1.1e-39 167.5 126 69.8
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 2.4e-39 166.4 126 65.9
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 3.2e-39 166.0 126 65.9
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 7.3e-36 154.8 128 60.9
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 1.8e-34 150.2 105 69.5
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 2.4e-34 149.8 126 64.3
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 2.9e-32 142.9 125 61.6
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 5.4e-31 138.7 90 71.1
Prupe.1G168000 Prunus persica HOM05D000007 ORTHO05D000521 1.6e-30 137.1 91 74.7
SMO364G0046 Selaginella moellendorffii HOM05D000324 ORTHO05D004875 1.1e-28 131.0 124 54.0
Pp3c19_18340 Physcomitrium patens HOM05D000324 ORTHO05D004875 3.3e-28 129.4 126 51.6
Pp3c23_17210 Physcomitrium patens HOM05D000324 ORTHO05D004875 6.9e-26 121.7 124 46.8
Nn1g08151 Nelumbo nucifera HOM05D000324 ORTHO05D004875 8.4e-24 114.8 76 76.3
Prupe.1G167800 Prunus persica HOM05D000007 ORTHO05D000521 3.9e-21 105.9 79 69.6
CBR_g38044 Chara braunii HOM05D000324 ORTHO05D004875 8.7e-21 104.8 129 41.1
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 4.3e-20 102.4 124 39.5
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.4e-18 97.4 75 69.3
Pp3c8_18330 Physcomitrium patens HOM05D000324 ORTHO05D004875 1.2e-17 94.4 95 47.4
Lj3A361T14 Lonicera japonica HOM05D000324 ORTHO05D004875 4.5e-17 92.4 68 73.5
SEGI_34416 Sequoiadendron giganteum HOM05D000324 ORTHO05D004875 3.5e-14 82.8 74 64.9
MD04G1020500 Malus domestica HOM05D000007 ORTHO05D000521 8.7e-13 78.2 93 44.1
Prupe.1G170100 Prunus persica HOM05D000007 ORTHO05D000521 1.9e-12 77.0 87 46.0
Prupe.1G167600 Prunus persica HOM05D000007 ORTHO05D000017 2.5e-12 76.6 78 44.9
MD04G1021100 Malus domestica HOM05D000007 ORTHO05D000521 1.6e-11 73.9 87 47.1
MD04G1020000 Malus domestica HOM05D000007 ORTHO05D000521 2.1e-11 73.6 89 47.2
RcHm_v2.0_Chr4g0409251 Rosa chinensis HOM05D000007 ORTHO05D000521 4.8e-11 72.4 133 35.3
FAN21G3512 Fragaria x ananassa HOM05D000007 ORTHO05D000521 1.4e-10 70.9 87 48.3
RcHm_v2.0_Chr4g0412771 Rosa chinensis HOM05D000007 ORTHO05D000521 2.4e-10 70.1 105 41.0
Prupe.1G170000 Prunus persica HOM05D000007 ORTHO05D000521 4.1e-10 69.3 86 44.2
FvH4_4g13040 Fragaria vesca HOM05D000007 ORTHO05D000521 3.4e-09 66.2 104 39.4
FAN12G3286 Fragaria x ananassa HOM05D000007 ORTHO05D000521 1.3e-08 64.3 98 39.8
RcHm_v2.0_Chr4g0412861 Rosa chinensis HOM05D000007 ORTHO05D000521 2.2e-08 63.5 93 40.9
RcHm_v2.0_Chr4g0412631 Rosa chinensis HOM05D000007 ORTHO05D000521 3.8e-08 62.8 98 37.8
Cre06.g299800 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D004875 6.5e-08 62.0 128 32.0
Cre12.g507400 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D003243 8.5e-08 61.6 130 26.9
FvH4_4g13060 Fragaria vesca HOM05D000007 ORTHO05D000521 1.1e-07 61.2 104 35.6
MD04G1018800 Malus domestica HOM05D000007 ORTHO05D000521 1.1e-07 61.2 75 46.7
RcHm_v2.0_Chr3g0474071 Rosa chinensis HOM05D000007 ORTHO05D025390 1.1e-07 61.2 93 40.9
FAN12G0768 Fragaria x ananassa HOM05D000007 ORTHO05D000521 1.9e-07 60.5 96 39.6
FAN20G3190 Fragaria x ananassa HOM05D000007 ORTHO05D035779 4.2e-07 59.3 92 38.0
FAN27G2322 Fragaria x ananassa HOM05D000007 ORTHO05D035779 4.2e-07 59.3 92 38.0
RcHm_v2.0_Chr3g0494781 Rosa chinensis HOM05D000007 ORTHO05D025390 4.2e-07 59.3 93 38.7
RcHm_v2.0_Chr3g0474061 Rosa chinensis HOM05D000007 ORTHO05D015114 5.5e-07 58.9 93 38.7
Cc01_g21620 Coffea canephora HOM05D000324 ORTHO05D001014 7.2e-07 58.5 131 30.5
FvH4_4g13100 Fragaria vesca HOM05D000007 ORTHO05D000521 9.3e-07 58.2 93 37.6
FAN12G3766 Fragaria x ananassa HOM05D000234 ORTHO05D001258 9.3e-07 58.2 93 37.6
CSS0029161 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.2e-06 57.8 95 34.7
Lj3A347G4 Lonicera japonica HOM05D000324 ORTHO05D004875 1.2e-06 57.8 75 49.3
FAN07G1646 Fragaria x ananassa HOM05D000007 ORTHO05D000521 2.1e-06 57.0 93 36.6
CSS0008382 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.7e-06 56.6 95 35.8
Cc02_g15850 Coffea canephora HOM05D000324 ORTHO05D001014 3.6e-06 56.2 131 29.8
CBR_g3027 Chara braunii HOM05D000324 ORTHO05D003243 4.6e-06 55.8 132 28.8
FvH4_4g12931 Fragaria vesca HOM05D000007 ORTHO05D000521 6.1e-06 55.5 96 38.5
CSS0006709 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.9e-06 55.1 95 34.7
CSS0040081 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.9e-06 55.1 95 34.7
Prupe.1G167900 Prunus persica HOM05D000007 ORTHO05D000521 7.9e-06 55.1 35 71.4


User provided reference genes

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