Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.9e-121 439.1 214 100.0
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.3e-109 399.8 205 94.1
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 1.9e-105 386.0 205 90.7
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 2.5e-100 369.0 205 85.4
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.5e-100 369.0 205 85.4
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 9.3e-100 367.1 205 85.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.3e-100 367.1 205 85.4
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.0e-98 363.6 205 84.9
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.2e-94 350.1 205 81.0
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.5e-94 349.7 205 81.0
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.1e-92 343.6 205 80.5
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.5e-92 342.4 205 80.0
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 3.2e-92 342.0 205 76.6
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 3.2e-92 342.0 205 77.6
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 5.5e-92 341.3 205 78.0
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 5.5e-92 341.3 204 78.4
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 9.3e-92 340.5 204 78.4
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 9.3e-92 340.5 206 77.7
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.6e-91 339.7 205 79.0
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 2.1e-91 339.3 204 77.9
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 7.9e-91 337.4 205 77.1
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.0e-90 337.0 222 73.4
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.8e-90 336.3 205 76.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 2.3e-90 335.9 205 77.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 3.9e-90 335.1 205 76.1
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 5.1e-90 334.7 205 75.6
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 6.7e-90 334.3 205 76.6
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.5e-89 333.2 205 77.1
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.5e-89 332.4 205 76.6
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.7e-89 331.3 205 76.6
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 9.7e-89 330.5 205 76.1
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.3e-88 330.1 204 76.0
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 2.2e-88 329.3 205 75.1
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.7e-88 328.6 205 76.6
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.1e-87 327.0 205 76.1
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.1e-87 327.0 205 76.1
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.4e-87 326.6 205 76.1
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.4e-87 326.6 205 74.6
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.3e-87 324.7 207 73.9
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 9.0e-87 323.9 205 74.1
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.9e-86 321.2 210 72.4
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 7.7e-86 320.9 205 72.7
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.0e-85 320.5 205 74.1
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.7e-85 319.7 205 72.7
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.7e-85 319.7 229 67.7
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.2e-85 319.3 205 72.7
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 2.2e-85 319.3 205 73.7
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.2e-85 319.3 205 73.7
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 2.9e-85 318.9 205 71.7
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 5.0e-85 318.2 205 72.7
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 6.5e-85 317.8 205 72.7
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.4e-84 316.6 206 72.8
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 3.2e-84 315.5 206 72.8
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 4.2e-84 315.1 205 72.7
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 5.5e-84 314.7 212 67.5
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 7.2e-84 314.3 205 73.2
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 7.2e-84 314.3 199 69.8
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.4e-84 313.9 205 73.7
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 9.4e-84 313.9 205 73.2
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.2e-83 313.5 205 72.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.6e-83 313.2 205 68.8
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.1e-83 312.8 205 69.3
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 2.1e-83 312.8 213 67.6
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.7e-83 312.4 205 68.8
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 2.7e-83 312.4 218 69.3
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 2.7e-83 312.4 205 72.2
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.7e-83 312.4 206 71.4
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 4.6e-83 311.6 205 69.3
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 4.6e-83 311.6 213 67.6
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.9e-83 310.8 206 71.8
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 7.9e-83 310.8 205 71.2
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 7.9e-83 310.8 204 69.6
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 7.9e-83 310.8 206 71.8
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 1.0e-82 310.5 205 69.3
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.8e-82 309.7 213 67.1
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 2.3e-82 309.3 213 66.7
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 2.3e-82 309.3 205 69.8
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 3.0e-82 308.9 204 68.6
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 8.8e-82 307.4 205 68.3
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 8.8e-82 307.4 236 64.0
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 3.3e-81 305.4 205 67.3
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 9.7e-81 303.9 237 63.3
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.7e-80 303.1 205 67.8
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 4.8e-80 301.6 206 69.9
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.8e-79 299.7 246 59.8
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.4e-79 299.3 199 67.3
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 2.4e-79 299.3 257 58.4
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 5.3e-79 298.1 205 67.8
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 9.1e-79 297.4 241 60.2
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.7e-77 293.1 175 77.1
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 2.2e-77 292.7 198 68.7
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 8.5e-77 290.8 217 65.4
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.4e-76 290.0 205 66.3
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.7e-75 285.8 205 68.8
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.0e-74 282.3 168 76.8
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.9e-69 265.8 199 64.3
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.0e-66 255.4 275 50.9
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 9.7e-65 250.8 244 50.8
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 9.1e-63 244.2 213 52.6
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 5.5e-60 235.0 212 50.9
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.6e-59 232.3 205 58.5
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.2e-57 227.3 205 56.1
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 3.6e-51 205.7 212 50.0
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.1e-51 204.9 147 68.7
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.0e-50 204.1 277 39.7
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.0e-50 204.1 242 45.9
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.8e-48 196.1 126 76.2
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 3.7e-48 195.7 213 46.9
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 4.5e-46 188.7 214 47.7
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 2.3e-42 176.4 213 43.2
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 1.2e-41 174.1 124 63.7
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 8.9e-34 147.9 169 45.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.9e-32 142.9 97 70.1
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.0e-29 132.9 83 77.1
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.0e-29 132.9 83 77.1
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.4e-26 124.0 71 74.6
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.0e-25 120.2 75 78.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.2e-23 112.8 59 81.4
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.3e-20 102.8 59 69.5
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.2e-19 100.9 146 44.5
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 2.2e-16 90.1 63 66.7
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.9e-12 77.0 119 39.5
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 3.3e-12 76.3 50 64.0
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.6e-11 73.9 50 62.0
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.6e-11 73.9 50 62.0
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.4e-09 66.2 43 62.8
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.7e-08 63.9 37 73.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.2e-06 57.8 38 60.5


User provided reference genes

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