Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 0.0e+00 2103.6 1057 100.0
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 0.0e+00 1362.8 1044 69.9
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 0.0e+00 1198.0 1046 64.0
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 0.0e+00 1169.8 1062 62.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1147.5 1062 61.3
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 0.0e+00 1141.7 1063 60.9
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1130.2 1062 60.3
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1093.6 1077 58.6
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 8.9e-252 874.4 1087 49.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.9e-246 856.7 1120 47.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 5.8e-235 818.5 1068 47.9
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.4e-228 796.6 1119 44.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.6e-224 782.3 1131 45.4
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 8.1e-221 771.5 1090 46.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.3e-220 768.8 1116 44.7
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-214 751.1 1146 42.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 4.3e-214 749.2 1092 44.4
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.2e-211 741.1 1121 44.0
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.2e-210 736.9 1122 43.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-209 734.2 1112 44.8
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.4e-209 733.4 1151 41.4
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.7e-208 729.9 1124 44.0
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.3e-206 723.0 1106 43.9
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 4.0e-204 716.1 1112 43.2
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.3e-199 701.0 1098 41.7
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.8e-197 693.3 1104 41.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.3e-196 689.1 1096 41.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-193 679.9 1099 42.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.2e-184 651.4 1122 40.4
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.0e-183 648.3 1081 38.9
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 9.7e-182 641.7 1088 39.4
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 5.9e-179 632.5 1089 38.2
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.4e-177 627.9 1099 39.2
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 8.8e-175 618.6 1056 40.3
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.0e-174 617.5 1030 40.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.1e-168 597.4 1114 38.2
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.6e-160 570.1 1100 37.4
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.7e-160 569.7 1079 36.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 5.3e-156 556.2 1084 36.2
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.2e-155 555.1 884 42.2
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.7e-154 551.2 1041 37.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.8e-149 533.9 1086 36.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 3.4e-142 510.4 1080 35.5
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 5.4e-140 503.1 1089 36.3
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 6.6e-138 496.1 1055 35.2
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.9e-137 494.6 1123 35.2
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.3e-137 493.4 1062 37.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 5.6e-137 493.0 1050 34.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.3e-135 487.6 1077 35.3
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.0e-135 486.9 1183 33.7
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.0e-135 486.9 1077 35.6
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.2e-134 485.3 1084 35.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.6e-134 484.2 1059 34.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 7.5e-134 482.6 1068 36.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.1e-132 478.8 1063 36.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 6.6e-130 469.5 1070 33.4
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-129 468.8 1082 33.0
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.3e-129 467.2 1086 34.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.3e-129 467.2 1164 32.4
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.6e-129 466.5 1183 33.7
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.3e-127 461.1 1074 34.3
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 8.9e-127 459.1 1143 32.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.0e-126 458.0 1066 33.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 9.8e-126 455.7 1074 34.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.4e-124 451.1 1126 32.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 7.1e-124 449.5 1055 33.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.1e-123 448.0 918 36.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.3e-119 434.5 1069 33.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 3.1e-119 434.1 1065 32.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.2e-119 433.3 1092 32.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 5.2e-111 406.8 586 44.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.9e-109 401.0 1061 32.4
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.9e-109 401.0 1095 32.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 8.4e-109 399.4 847 34.8
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.1e-108 399.1 1179 30.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.7e-106 389.4 1049 31.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.6e-104 384.0 661 41.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.4e-103 382.1 1070 32.4
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.1e-103 380.9 1041 31.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.0e-102 378.3 896 33.1
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.7e-101 375.2 862 34.7
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.1e-99 368.2 837 34.5
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.5e-97 362.1 738 35.4
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.1e-95 355.9 1072 31.0
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.3e-89 334.3 412 50.2
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.4e-87 328.2 793 32.4
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.9e-85 321.2 723 34.6
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.9e-85 321.2 723 34.6
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.5e-84 318.2 723 34.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.9e-81 308.5 879 31.9
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.8e-80 304.7 868 31.6
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.1e-79 301.2 778 34.4
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 7.9e-75 286.6 697 32.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.6e-72 278.9 769 32.5
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.0e-69 269.6 1101 26.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.2e-69 268.5 507 37.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.1e-67 261.9 961 27.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.0e-65 255.4 747 31.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 5.7e-65 253.8 935 28.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.1e-58 230.7 514 34.6
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 5.7e-57 227.3 745 31.4
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.7e-57 226.5 536 36.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 9.7e-57 226.5 777 31.0
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 3.1e-55 221.5 246 48.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 7.0e-55 220.3 481 33.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.7e-53 215.7 165 66.1
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-52 213.0 330 37.3
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-48 199.1 488 32.8
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 6.3e-48 197.2 647 29.8
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.8e-47 195.7 777 30.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.6e-46 192.6 305 35.4
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.7e-46 191.8 996 26.1
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 5.9e-46 190.7 721 27.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.7e-41 174.1 174 49.4
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.7e-40 172.6 758 27.3
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-37 162.5 802 24.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-36 159.8 151 55.0
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.5e-36 157.5 134 56.7
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 4.7e-35 154.5 582 27.1
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.4e-34 152.9 172 47.1
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.2e-34 151.0 138 52.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-33 149.8 736 27.3
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.2e-33 149.8 523 29.8
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.2e-33 149.8 347 28.8
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.5e-33 149.4 133 55.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.0e-33 149.1 220 42.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.4e-33 147.9 182 44.0
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 4.1e-31 141.4 135 52.6
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.9e-29 135.2 110 60.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.3e-28 131.7 685 26.7
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.3e-28 130.6 303 33.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 9.5e-28 130.2 468 29.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.0e-25 122.5 126 50.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.4e-23 115.5 314 28.3
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 4.1e-23 114.8 319 28.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.9e-22 110.9 327 27.8
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.5e-20 105.5 69 65.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 5.8e-17 94.4 758 23.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.9e-16 92.0 424 29.0
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.1e-15 90.1 439 26.7
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-14 86.7 751 23.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 4.3e-12 78.2 59 61.0
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 9.5e-12 77.0 183 36.6
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 2.2e-08 65.9 303 25.7


User provided reference genes

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