Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 0.0e+00 1235.3 616 100.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 0.0e+00 1127.9 627 90.9
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.2e-312 1074.7 621 87.3
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.6e-307 1056.2 626 85.0
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 6.2e-306 1053.5 588 88.3
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.2e-306 1053.5 615 86.3
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 4.0e-305 1050.8 617 84.6
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.0e-304 1048.5 618 84.5
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.7e-303 1045.4 617 83.8
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.9e-303 1043.9 618 83.5
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.4e-303 1043.5 614 84.2
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-302 1042.7 621 85.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.1e-302 1042.7 616 83.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.4e-302 1041.6 616 83.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.2e-302 1041.2 619 83.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.3e-300 1035.0 661 80.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 5.1e-300 1033.9 618 83.5
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.5e-299 1032.3 617 83.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.8e-298 1028.1 609 84.6
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-297 1026.2 620 83.1
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.4e-297 1025.8 617 83.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 3.1e-297 1024.6 617 82.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 4.0e-297 1024.2 616 82.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 4.0e-297 1024.2 616 83.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 619 82.9
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 617 81.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 617 83.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.5e-296 1020.8 619 82.7
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 618 82.4
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 613 81.9
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-295 1018.5 617 82.0
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.2e-295 1018.5 619 83.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 616 82.0
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 617 82.2
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 6.5e-295 1016.9 616 83.1
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.4e-295 1016.5 626 82.6
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 620 82.3
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 618 82.5
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 628 81.4
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 618 82.0
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 622 81.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 623 82.0
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 618 82.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.6e-293 1012.3 616 82.6
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 617 81.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 618 81.7
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 619 81.4
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 602 83.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 604 81.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 596 83.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 616 81.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 621 80.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 603 82.6
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 603 82.6
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 616 81.5
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 617 81.2
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 608 82.1
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.1e-289 999.6 620 80.3
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 1.1e-289 999.6 599 82.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 587 83.0
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.4e-289 999.2 616 82.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.4e-289 998.4 621 80.2
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 3.1e-289 998.0 619 82.1
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 4.1e-289 997.7 604 81.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.1e-289 997.7 618 81.7
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.3e-289 997.3 621 81.6
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.3e-289 997.3 609 80.6
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 6.9e-289 996.9 593 83.5
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 9.0e-289 996.5 629 80.1
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 2.6e-288 995.0 621 82.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.6e-288 995.0 621 82.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 5.8e-288 993.8 625 80.3
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.3e-287 992.6 621 81.3
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.8e-287 991.1 622 81.5
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 5.0e-287 990.7 616 80.8
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 8.4e-287 989.9 621 81.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 8.4e-287 989.9 621 81.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.4e-286 989.2 619 79.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.2e-286 988.0 640 79.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.2e-286 988.0 607 81.7
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 4.2e-286 987.6 621 81.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 4.2e-286 987.6 618 81.1
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 4.2e-286 987.6 618 81.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 627 79.1
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 7.1e-286 986.9 621 81.2
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.6e-285 985.7 627 78.6
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.1e-285 985.3 573 84.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.7e-285 984.9 618 80.7
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.8e-284 982.2 614 81.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.8e-284 982.2 616 80.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.0e-284 981.5 611 80.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 5.1e-284 980.7 648 75.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 6.7e-284 980.3 558 86.0
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 8.7e-284 979.9 616 80.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.5e-283 979.2 619 80.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.5e-283 979.2 558 85.8
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 3.3e-283 978.0 636 78.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 5.7e-283 977.2 635 79.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.3e-282 976.1 558 85.7
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.8e-282 974.9 662 75.1
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.7e-282 974.5 621 79.7
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 6.3e-282 973.8 599 80.8
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.8e-281 972.2 650 76.6
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.0e-280 968.8 569 83.3
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.6e-280 968.4 563 84.2
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.3e-275 951.0 694 71.8
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.1e-273 944.9 566 81.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.1e-273 944.5 629 76.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.2e-272 943.0 527 87.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.5e-271 936.8 565 83.2
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.2e-269 932.9 584 77.7
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-269 932.2 637 73.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.6e-267 925.2 575 77.6
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.7e-266 922.5 588 77.0
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.8e-263 911.4 622 75.6
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-257 893.3 593 73.7
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.2e-255 885.6 635 73.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.6e-253 879.4 539 80.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 3.6e-253 878.2 579 73.2
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.7e-253 877.9 527 80.8
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.2e-251 873.2 627 71.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 8.3e-250 867.1 629 73.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-247 858.6 621 72.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 6.4e-234 814.3 585 67.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 7.3e-230 800.8 557 69.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.8e-228 794.3 490 79.4
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 7.0e-225 784.3 486 81.9
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.5e-224 781.9 498 77.1
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.9e-223 778.5 490 80.4
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.7e-216 755.7 433 84.8
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.7e-215 753.1 426 86.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 3.6e-213 745.3 552 64.9
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-209 733.0 490 75.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.6e-205 719.9 433 80.4
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.4e-203 711.8 437 79.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-197 693.3 569 59.8
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.5e-187 658.7 403 81.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.9e-177 626.7 433 75.1
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.5e-163 578.9 613 49.9
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.6e-158 563.1 312 88.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.6e-152 543.9 384 74.2
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.8e-128 463.4 340 73.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.3e-122 443.7 290 77.9
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.2e-104 384.8 277 68.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 3.4e-94 350.1 216 79.6
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 4.5e-78 296.6 210 75.7
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.3e-77 295.0 160 89.4
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.7e-74 282.7 559 33.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.8e-70 269.6 150 87.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.0e-63 246.9 131 90.8
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 7.4e-57 226.1 133 78.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.3e-56 225.3 117 97.4
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 4.8e-56 223.4 126 84.1
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 9.3e-52 209.1 145 73.8
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 9.3e-52 209.1 178 64.6
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.2e-51 208.8 114 84.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.9e-49 201.4 115 80.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.6e-46 191.0 147 66.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.5e-46 190.3 105 83.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.1e-44 185.7 115 79.1
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.7e-41 173.3 156 61.5
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 5.7e-41 173.3 111 81.1
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 8.2e-40 169.5 144 64.6
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.0e-38 164.9 212 46.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.7e-27 127.1 116 61.2
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.2e-26 123.6 61 95.1
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 4.8e-24 117.1 70 71.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.2e-21 108.2 56 92.9
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 9.4e-20 102.8 212 34.4
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.8e-15 88.6 98 52.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.1e-15 87.8 180 30.0
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.9e-12 78.6 96 50.0
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.5e-12 78.2 67 55.2
SMO199G0036 Selaginella moellendorffii HOM05D018282 ORTHO05D378716 5.9e-06 57.0 55 58.2


User provided reference genes

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