Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 2.7e-194 681.8 342 100.0
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 4.2e-94 349.0 309 57.6
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 4.5e-88 328.9 298 54.0
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.7e-87 327.0 298 54.4
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 6.5e-87 325.1 290 54.8
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 1.9e-86 323.6 304 53.3
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 3.2e-86 322.8 307 53.4
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 4.2e-86 322.4 310 52.9
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 5.5e-86 322.0 282 55.3
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 5.5e-86 322.0 323 51.4
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 7.2e-86 321.6 323 52.0
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 1.2e-85 320.9 337 50.1
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 1.6e-85 320.5 338 48.8
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 1.6e-85 320.5 315 52.1
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 2.1e-85 320.1 296 53.7
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 6.1e-85 318.5 335 49.0
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 6.1e-85 318.5 304 52.6
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 7.9e-85 318.2 231 64.1
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 1.4e-84 317.4 306 51.3
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.8e-84 317.0 330 49.7
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 3.0e-84 316.2 307 51.1
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 3.0e-84 316.2 304 52.3
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 5.1e-84 315.5 305 51.8
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 8.8e-84 314.7 311 52.7
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.1e-83 314.3 313 52.4
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.1e-83 314.3 322 50.9
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 1.5e-83 313.9 312 50.0
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 2.0e-83 313.5 305 51.5
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 2.0e-83 313.5 306 52.3
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 2.0e-83 313.5 261 57.1
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 2.6e-83 313.2 305 51.5
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 2.6e-83 313.2 291 53.6
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 4.4e-83 312.4 306 51.0
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 7.4e-83 311.6 269 55.4
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 7.4e-83 311.6 335 48.4
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 1.7e-82 310.5 299 52.2
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 2.2e-82 310.1 310 51.0
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 2.8e-82 309.7 271 56.1
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 3.7e-82 309.3 310 50.6
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 4.8e-82 308.9 306 51.0
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 4.8e-82 308.9 334 49.7
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 6.3e-82 308.5 297 53.2
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 8.2e-82 308.1 307 50.2
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 1.1e-81 307.8 322 49.4
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 1.4e-81 307.4 312 49.4
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 1.4e-81 307.4 319 48.9
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 1.8e-81 307.0 282 53.2
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 2.4e-81 306.6 289 52.6
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 2.4e-81 306.6 289 53.6
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 3.1e-81 306.2 306 51.3
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 3.1e-81 306.2 306 51.6
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 3.1e-81 306.2 297 52.2
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 4.1e-81 305.8 306 50.7
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 4.1e-81 305.8 304 50.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.1e-81 305.8 257 58.0
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 4.1e-81 305.8 310 50.3
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 5.3e-81 305.4 336 47.9
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 5.3e-81 305.4 287 53.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 6.9e-81 305.1 306 50.3
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 9.1e-81 304.7 306 51.3
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 9.1e-81 304.7 315 48.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 9.1e-81 304.7 257 57.6
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 1.2e-80 304.3 354 47.7
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 1.5e-80 303.9 305 50.2
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 2.0e-80 303.5 304 51.0
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 2.0e-80 303.5 353 47.6
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 2.0e-80 303.5 353 47.6
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 2.0e-80 303.5 282 53.9
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 2.6e-80 303.1 335 49.3
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 2.6e-80 303.1 286 53.5
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 3.4e-80 302.8 304 50.0
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 4.5e-80 302.4 306 50.0
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 4.5e-80 302.4 331 48.6
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 7.7e-80 301.6 352 46.9
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 7.7e-80 301.6 352 46.9
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 7.7e-80 301.6 315 50.8
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 1.7e-79 300.4 323 49.2
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 2.9e-79 299.7 299 52.2
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 6.5e-79 298.5 310 51.3
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.1e-78 297.7 361 45.4
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.1e-78 297.7 317 49.2
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 2.5e-78 296.6 332 47.0
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 7.2e-78 295.0 231 58.4
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 9.4e-78 294.7 322 47.8
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 1.2e-77 294.3 347 47.0
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.6e-77 293.9 308 48.4
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 2.7e-77 293.1 231 61.0
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 2.7e-77 293.1 307 48.2
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 3.6e-77 292.7 260 55.0
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 8.0e-77 291.6 250 55.2
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.0e-76 291.2 236 58.5
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.4e-76 290.8 245 58.0
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 6.7e-76 288.5 341 46.3
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 1.1e-75 287.7 237 56.5
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.5e-75 287.3 341 46.0
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 2.0e-75 287.0 310 48.1
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 4.8e-74 282.3 312 48.1
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 7.0e-73 278.5 215 60.0
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 8.5e-71 271.6 268 51.5
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 5.5e-62 242.3 333 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 5.7e-59 232.3 191 57.1
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 9.1e-57 224.9 188 56.4
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 1.0e-55 221.5 335 40.3
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 6.6e-55 218.8 178 57.9
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 6.6e-55 218.8 178 57.9
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.5e-54 217.6 222 47.3
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 4.4e-51 206.1 214 47.2
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 1.1e-49 201.4 202 49.5
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 1.9e-46 190.7 195 48.2
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.4e-41 173.7 190 48.4
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 1.5e-35 154.5 141 52.5
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 6.8e-20 102.4 84 57.1
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 4.3e-14 83.2 122 39.3
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 3.8e-10 70.1 69 47.8
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 4.9e-10 69.7 119 34.5


User provided reference genes

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