Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_4170 Physcomitrium patens HOM05D007983 ORTHO05D010117 2.8e-216 755.0 383 100.0
Cfa018016 Carpinus fangiana HOM05D007983 ORTHO05D010117 3.7e-22 110.2 328 29.3
Haze_18113 Corylus avellana HOM05D007983 ORTHO05D010117 3.7e-22 110.2 346 29.5
SGA_v2.0_scaffold20G09171 Striga asiatica HOM05D007983 ORTHO05D010117 3.7e-22 110.2 284 29.9
COL.COLO4_21129 Corchorus olitorius HOM05D007983 ORTHO05D010117 4.5e-20 103.2 282 29.4
Thecc.09G062200 Theobroma cacao HOM05D007983 ORTHO05D010117 2.2e-19 100.9 314 30.3
Gohir.A06G082600 Gossypium hirsutum HOM05D007983 ORTHO05D010117 6.5e-19 99.4 283 29.0
ATR0598G010 Amborella trichopoda HOM05D007983 ORTHO05D010117 1.9e-18 97.8 359 27.3
Manes.16G085100 Manihot esculenta HOM05D007983 ORTHO05D010117 1.9e-18 97.8 311 29.3
GSVIVG01035456001 Vitis vinifera HOM05D007983 ORTHO05D010117 3.2e-18 97.1 300 28.7
FvH4_2g31120 Fragaria vesca HOM05D007983 ORTHO05D010117 4.2e-18 96.7 288 29.5
Ciclev10007465m.g Citrus clementina HOM05D007983 ORTHO05D010117 5.5e-18 96.3 338 26.0
FAN24G0660 Fragaria x ananassa HOM05D007983 ORTHO05D010117 5.5e-18 96.3 287 29.6
MBI13_g11355_MAGBIO Magnolia biondii HOM05D007983 ORTHO05D010117 1.2e-17 95.1 313 29.1
Lj7A227T29 Lonicera japonica HOM05D007983 ORTHO05D010117 1.6e-17 94.7 298 27.9
QL02p016696 Quercus lobata HOM05D007983 ORTHO05D010117 1.6e-17 94.7 300 29.0
FAN27G2148 Fragaria x ananassa HOM05D007983 ORTHO05D010117 2.1e-17 94.4 290 31.0
Lj7C225G3 Lonicera japonica HOM05D007983 ORTHO05D010117 2.7e-17 94.0 292 27.4
TAR383G0105 Trochodendron aralioides HOM05D007983 ORTHO05D010117 3.6e-17 93.6 306 29.7
Gohir.D06G083500 Gossypium hirsutum HOM05D007983 ORTHO05D010117 6.1e-17 92.8 293 28.0
Cc08_g01250 Coffea canephora HOM05D007983 ORTHO05D010117 1.4e-16 91.7 283 29.0
SGA_v2.0_scaffold64G21870 Striga asiatica HOM05D007983 ORTHO05D010117 1.4e-16 91.7 285 30.9
Nn8g38701 Nelumbo nucifera HOM05D007983 ORTHO05D010117 2.3e-16 90.9 354 29.4
Migut.A00082 Erythranthe guttata HOM05D007983 ORTHO05D010117 3.0e-16 90.5 293 29.0
Actinidia29344 Actinidia chinensis HOM05D007983 ORTHO05D010117 6.7e-16 89.4 306 28.4
Dinv02180 Davidia involucrata HOM05D007983 ORTHO05D010117 8.8e-16 89.0 298 28.5
Oeu003976.2 Olea europaea HOM05D007983 ORTHO05D010117 8.8e-16 89.0 338 26.6
RcHm_v2.0_Chr6g0311661 Rosa chinensis HOM05D007983 ORTHO05D010117 8.8e-16 89.0 289 29.1
EL10Ac2g03791 Beta vulgaris HOM05D007983 ORTHO05D010117 1.1e-15 88.6 318 25.8
MD08G1070600 Malus domestica HOM05D007983 ORTHO05D010117 1.1e-15 88.6 294 27.6
Sed0022705 Sechium edule HOM05D007983 ORTHO05D010117 1.1e-15 88.6 285 28.8
Atru.chr7.1856 Acer truncatum HOM05D007983 ORTHO05D010117 1.5e-15 88.2 329 27.4
Prupe.1G405500 Prunus persica HOM05D007983 ORTHO05D010117 1.5e-15 88.2 295 30.2
Hund19424 Selenicereus undatus HOM05D007983 ORTHO05D010117 1.5e-15 88.2 367 28.3
SEGI_25530 Sequoiadendron giganteum HOM05D007983 ORTHO05D010117 1.5e-15 88.2 331 26.9
Aqoxy7G01072 Aquilegia oxysepala HOM05D007983 ORTHO05D010117 2.8e-14 84.0 305 25.9
Peaxi162Scf00101g00166 Petunia axillaris HOM05D007983 ORTHO05D010117 3.7e-14 83.6 269 29.7
Ah.10g033950 Amaranthus hybridus HOM05D007983 ORTHO05D010117 8.2e-14 82.4 309 28.5
HanXRQChr05g0136011 Helianthus annuus HOM05D007983 ORTHO05D010117 1.4e-13 81.6 275 25.5
CANSAT25G2345 Cannabis sativa HOM05D007983 ORTHO05D010117 2.4e-13 80.9 398 26.6
Oeu022786.3 Olea europaea HOM05D007983 ORTHO05D010117 2.4e-13 80.9 287 27.5
AUR62020583 Chenopodium quinoa HOM05D007983 ORTHO05D010117 5.3e-13 79.7 295 26.8
Sopen08g017390 Solanum pennellii HOM05D007983 ORTHO05D010117 1.2e-12 78.6 278 28.1
Nitab4.5_0008611g0010 Nicotiana tabacum HOM05D007983 ORTHO05D010117 1.5e-12 78.2 290 27.2
ECA236G1209 Erigeron canadensis HOM05D007983 ORTHO05D010117 2.0e-12 77.8 279 26.5
HanXRQChr09g0261791 Helianthus annuus HOM05D007983 ORTHO05D010117 2.0e-12 77.8 279 27.2
AUR62009087 Chenopodium quinoa HOM05D007983 ORTHO05D010117 2.6e-12 77.4 76 47.4
MELO3C011486.2 Cucumis melo HOM05D007983 ORTHO05D010117 2.6e-12 77.4 287 29.3
CsaV3_6G031940 Cucumis sativus L. HOM05D007983 ORTHO05D010117 4.5e-12 76.6 291 29.6
Pp3c2_9100 Physcomitrium patens HOM05D002513 ORTHO05D002720 7.7e-12 75.9 86 45.3
Pp3c1_38750 Physcomitrium patens HOM05D002513 ORTHO05D002720 1.3e-11 75.1 86 46.5
Solyc08g061890.4 Solanum lycopersicum HOM05D007983 ORTHO05D010117 1.3e-11 75.1 296 27.4
CAN.G20.9 Capsicum annuum HOM05D007983 ORTHO05D010117 2.2e-11 74.3 282 26.2
PGSC0003DMG400021755 Solanum tuberosum HOM05D007983 ORTHO05D010117 2.2e-11 74.3 297 25.3
CDE05G0854 Ceratophyllum demersum HOM05D007983 ORTHO05D010117 2.9e-11 73.9 68 50.0
Hma1.2p1_0231F.1_g097380 Hydrangea macrophylla HOM05D007983 ORTHO05D010117 3.8e-11 73.6 123 35.8
MD15G1051500 Malus domestica HOM05D007983 ORTHO05D010117 3.8e-11 73.6 297 27.9
HPP92_004367 Vanilla planifolia HOM05D002513 ORTHO05D002720 3.8e-11 73.6 381 24.9
Aqoxy5G00460 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 1.4e-10 71.6 377 24.4
DCAR_001219 Daucus carota HOM05D007983 ORTHO05D010117 1.4e-10 71.6 118 36.4
Solyc01g110950.3 Solanum lycopersicum HOM05D002513 ORTHO05D002720 1.9e-10 71.2 329 26.1
Eucgr.C00720 Eucalyptus grandis HOM05D007983 ORTHO05D010117 2.5e-10 70.9 76 44.7
Mapoly0094s0033 Marchantia polymorpha HOM05D002513 ORTHO05D002720 2.5e-10 70.9 82 45.1
Gorai.010G097000 Gossypium raimondii HOM05D007983 ORTHO05D010117 4.2e-10 70.1 84 42.9
Actinidia03544 Actinidia chinensis HOM05D007983 ORTHO05D010117 7.2e-10 69.3 74 44.6
Lsat_1_v5_gn_8_70680 Lactuca sativa HOM05D007983 ORTHO05D010117 9.4e-10 68.9 280 25.7
Hund14574 Selenicereus undatus HOM05D002513 ORTHO05D002720 9.4e-10 68.9 389 24.7
CBR_g21758 Chara braunii HOM05D002513 ORTHO05D002720 1.2e-09 68.6 80 38.8
Nn1g02339 Nelumbo nucifera HOM05D002513 ORTHO05D002720 1.6e-09 68.2 387 24.3
Nitab4.5_0000348g0110 Nicotiana tabacum HOM05D002513 ORTHO05D002720 2.1e-09 67.8 415 24.3
Mapoly0024s0115 Marchantia polymorpha HOM05D002513 ORTHO05D002720 2.7e-09 67.4 385 23.9
Os10g0431000 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 2.7e-09 67.4 388 24.5
Gorai.009G359800 Gossypium raimondii HOM05D002513 ORTHO05D002720 3.6e-09 67.0 305 24.3
Sopen01g052990 Solanum pennellii HOM05D002513 ORTHO05D002720 3.6e-09 67.0 330 23.9
DCAR_004382 Daucus carota HOM05D007983 ORTHO05D010117 4.7e-09 66.6 277 23.8
Gohir.A04G046440 Gossypium hirsutum HOM05D002513 ORTHO05D002720 4.7e-09 66.6 311 24.4
Gohir.A07G155768 Gossypium hirsutum HOM05D002513 ORTHO05D002720 6.1e-09 66.2 323 24.5
PSO017G3097 Papaver somniferum HOM05D002513 ORTHO05D002720 6.1e-09 66.2 374 24.3
PSO017G7086 Papaver somniferum HOM05D002513 ORTHO05D002720 6.1e-09 66.2 374 24.3
SEGI_13497 Sequoiadendron giganteum HOM05D002513 ORTHO05D002720 7.9e-09 65.9 381 23.9
Psat4g074080 Pisum sativum HOM05D002513 ORTHO05D002720 1.0e-08 65.5 379 25.1
Glyma.17G143300 Glycine max HOM05D002513 ORTHO05D002720 1.4e-08 65.1 436 23.2
Nitab4.5_0001070g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 1.4e-08 65.1 417 24.2
Peaxi162Scf01003g00012 Petunia axillaris HOM05D002513 ORTHO05D002720 1.4e-08 65.1 361 25.5
Sed0012573 Sechium edule HOM05D002513 ORTHO05D002720 1.4e-08 65.1 399 24.6
arahy.Tifrunner.gnm1.ann1.40EGC8 Arachis hypogaea HOM05D002513 ORTHO05D002720 3.0e-08 63.9 419 22.4
MSTRG.12118 Avicennia marina HOM05D002513 ORTHO05D002720 3.0e-08 63.9 453 23.2
Lalb_Chr16g0386791 Lupinus albus HOM05D002513 ORTHO05D002720 3.0e-08 63.9 398 22.9
MD04G1061900 Malus domestica HOM05D002513 ORTHO05D002720 3.0e-08 63.9 387 24.8
Sopen03g004090 Solanum pennellii HOM05D002513 ORTHO05D002720 3.0e-08 63.9 325 26.5
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 3.0e-08 63.9 83 42.2
PGSC0003DMG400001600 Solanum tuberosum HOM05D002513 ORTHO05D002720 3.9e-08 63.5 326 24.2
Glyma.05G061500 Glycine max HOM05D002513 ORTHO05D002720 5.2e-08 63.2 395 24.1
QL12p011564 Quercus lobata HOM05D002513 ORTHO05D002720 6.7e-08 62.8 396 24.2
Aqoxy2G03401 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 8.8e-08 62.4 100 39.0
Solyc03g025260.1 Solanum lycopersicum HOM05D002513 ORTHO05D002720 8.8e-08 62.4 332 25.0
Rhsim11G0000900 Rhododendron simsii HOM05D002513 ORTHO05D002720 1.1e-07 62.0 467 23.3
Medtr5g097760 Medicago truncatula HOM05D002513 ORTHO05D002720 2.6e-07 60.8 144 29.9
arahy.Tifrunner.gnm1.ann1.Y2TGKW Arachis hypogaea HOM05D002513 ORTHO05D002720 3.3e-07 60.5 466 24.0
CBR_g9113 Chara braunii HOM05D007983 ORTHO05D010117 3.3e-07 60.5 67 40.3
EL10Ac3g07351 Beta vulgaris HOM05D002513 ORTHO05D002720 4.4e-07 60.1 386 24.4
HanXRQChr13g0417821 Helianthus annuus HOM05D002513 ORTHO05D002720 4.4e-07 60.1 87 41.4
Thecc.07G145300 Theobroma cacao HOM05D002513 ORTHO05D002720 4.4e-07 60.1 315 25.7
TWI63G1392 Tripterygium wilfordii HOM05D007983 ORTHO05D010117 4.4e-07 60.1 374 23.3
Zm00001eb052630 Zea mays HOM05D002513 ORTHO05D002720 4.4e-07 60.1 393 23.7
BcaB07g30777 Brassica carinata HOM05D002513 ORTHO05D002720 5.7e-07 59.7 92 39.1
Cpa.g.sc53.64 Carica papaya HOM05D002513 ORTHO05D002720 5.7e-07 59.7 451 22.8
ATR0697G259 Amborella trichopoda HOM05D002513 ORTHO05D002720 7.4e-07 59.3 154 31.8
PGR042G3434 Punica granatum HOM05D002513 ORTHO05D002720 7.4e-07 59.3 83 41.0
THA.LOC104798367 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 7.4e-07 59.3 92 39.1
Actinidia14412 Actinidia chinensis HOM05D002513 ORTHO05D002720 9.7e-07 58.9 83 39.8
FAN13G1831 Fragaria x ananassa HOM05D002513 ORTHO05D002720 9.7e-07 58.9 83 39.8
GSVIVG01006271001 Vitis vinifera HOM05D002513 ORTHO05D002720 9.7e-07 58.9 83 41.0
arahy.Tifrunner.gnm1.ann1.V507XA Arachis hypogaea HOM05D002513 ORTHO05D002720 1.3e-06 58.5 464 23.1
Carub.0007s2401 Capsella rubella HOM05D002513 ORTHO05D002720 1.3e-06 58.5 83 39.8
CARHR224010 Cardamine hirsuta HOM05D002513 ORTHO05D002720 1.3e-06 58.5 374 24.1
Ca_03894_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 1.3e-06 58.5 103 34.0
Cc08_g12210 Coffea canephora HOM05D002513 ORTHO05D002720 1.3e-06 58.5 94 37.2
COL.COLO4_10827 Corchorus olitorius HOM05D002513 ORTHO05D002720 1.3e-06 58.5 176 30.1
COL.COLO4_37135 Corchorus olitorius HOM05D002513 ORTHO05D002720 1.3e-06 58.5 364 23.4
ECA240G4211 Erigeron canadensis HOM05D002513 ORTHO05D002720 1.3e-06 58.5 83 39.8
Manes.01G082800 Manihot esculenta HOM05D002513 ORTHO05D002720 1.3e-06 58.5 83 39.8
Manes.16G090700 Manihot esculenta HOM05D002513 ORTHO05D002720 1.3e-06 58.5 95 42.1
Manes.16G090800 Manihot esculenta HOM05D002513 ORTHO05D002720 1.3e-06 58.5 104 41.3
RcHm_v2.0_Chr7g0203801 Rosa chinensis HOM05D002513 ORTHO05D002720 1.3e-06 58.5 83 39.8
Sp7g16790 Schrenkiella parvula HOM05D002513 ORTHO05D002720 1.3e-06 58.5 83 39.8
SMO115G0156 Selaginella moellendorffii HOM05D002513 ORTHO05D002720 1.3e-06 58.5 88 38.6
arahy.Tifrunner.gnm1.ann1.3AS7PC Arachis hypogaea HOM05D002513 ORTHO05D002720 1.7e-06 58.2 170 31.2
Haze_20631 Corylus avellana HOM05D002513 ORTHO05D002720 1.7e-06 58.2 93 39.8
FvH4_5g19330 Fragaria vesca HOM05D002513 ORTHO05D002720 1.7e-06 58.2 83 39.8
FAN04G1005 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.7e-06 58.2 83 39.8
FAN18G4043 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.7e-06 58.2 83 39.8
Lsat_1_v5_gn_6_92441 Lactuca sativa HOM05D002513 ORTHO05D002720 1.7e-06 58.2 83 39.8
Nn4g26338 Nelumbo nucifera HOM05D002513 ORTHO05D002720 1.7e-06 58.2 83 39.8
Potri.001G156000 Populus trichocarpa HOM05D002513 ORTHO05D002720 1.7e-06 58.2 103 35.0
TAR636G2655 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.7e-06 58.2 456 22.1
CSS0000182 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 2.2e-06 57.8 83 39.8
Ciclev10018818m.g Citrus clementina HOM05D002513 ORTHO05D002720 2.2e-06 57.8 91 38.5
Duzib041G0095 Durio zibethinus HOM05D002513 ORTHO05D002720 2.2e-06 57.8 341 24.0
Duzib205G1336 Durio zibethinus HOM05D002513 ORTHO05D002720 2.2e-06 57.8 83 39.8
Migut.A01126 Erythranthe guttata HOM05D002513 ORTHO05D002720 2.2e-06 57.8 87 40.2
Eucgr.E00408 Eucalyptus grandis HOM05D002513 ORTHO05D002720 2.2e-06 57.8 83 38.6
Lj8A268G24 Lonicera japonica HOM05D002513 ORTHO05D002720 2.2e-06 57.8 463 22.5
Lj4g0017155 Lotus japonicus HOM05D002513 ORTHO05D002720 2.2e-06 57.8 92 37.0
Thecc.03G248600 Theobroma cacao HOM05D002513 ORTHO05D002720 2.2e-06 57.8 83 39.8
TAR633G0646 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.2e-06 57.8 456 22.1
TAR636G3267 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.2e-06 57.8 83 42.2
CDE06G2836 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 2.8e-06 57.4 83 38.6
Potri.003G078800 Populus trichocarpa HOM05D002513 ORTHO05D002720 2.8e-06 57.4 83 39.8
SGA_v2.0_scaffold199G41180 Striga asiatica HOM05D002513 ORTHO05D002720 2.8e-06 57.4 407 23.8
TAR629G3140 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.8e-06 57.4 83 38.6
Dinv39163 Davidia involucrata HOM05D002513 ORTHO05D002720 3.7e-06 57.0 84 39.3
Hma1.2p1_0316F.1_g122910 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 3.7e-06 57.0 83 38.6
Hma1.2p1_0316F.1_g122915 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 3.7e-06 57.0 83 38.6
QL02p014349 Quercus lobata HOM05D007983 ORTHO05D010117 3.7e-06 57.0 73 41.1
Sabra13G0095300 Salix brachista HOM05D002513 ORTHO05D002720 3.7e-06 57.0 146 31.5
PGSC0003DMG400010163 Solanum tuberosum HOM05D002513 ORTHO05D002720 3.7e-06 57.0 353 25.5
A01p20000 Brassica napus HOM05D002513 ORTHO05D002720 4.8e-06 56.6 83 38.6
BraA01t01923Z Brassica rapa HOM05D002513 ORTHO05D002720 4.8e-06 56.6 83 38.6
CAN.G841.7 Capsicum annuum HOM05D002513 ORTHO05D002720 4.8e-06 56.6 103 35.9
Cfa017519 Carpinus fangiana HOM05D002513 ORTHO05D002720 4.8e-06 56.6 87 41.4
Atru.chr9.1284 Acer truncatum HOM05D002513 ORTHO05D002720 6.3e-06 56.2 83 39.8
Lalb_Chr05g0221181 Lupinus albus HOM05D002513 ORTHO05D002720 6.3e-06 56.2 118 33.9
MD06G1055600 Malus domestica HOM05D002513 ORTHO05D002720 6.3e-06 56.2 91 38.5
Phvul.003G222100 Phaseolus vulgaris HOM05D002513 ORTHO05D002720 6.3e-06 56.2 103 35.0
PGSC0003DMG400001652 Solanum tuberosum HOM05D002513 ORTHO05D002720 6.3e-06 56.2 290 23.4
SGA_v2.0_scaffold104G30173 Striga asiatica HOM05D002513 ORTHO05D002720 6.3e-06 56.2 94 36.2
BcaC04g21626 Brassica carinata HOM05D002513 ORTHO05D002720 8.2e-06 55.8 92 38.0
A09p23030 Brassica napus HOM05D002513 ORTHO05D002720 8.2e-06 55.8 92 38.0
C09p29740 Brassica napus HOM05D002513 ORTHO05D002720 8.2e-06 55.8 92 38.0
BolC9t55837H Brassica oleracea HOM05D002513 ORTHO05D002720 8.2e-06 55.8 92 38.0
BraA09t37907Z Brassica rapa HOM05D002513 ORTHO05D002720 8.2e-06 55.8 92 38.0
Prupe.5G066400 Prunus persica HOM05D002513 ORTHO05D002720 8.2e-06 55.8 91 38.5
VMungo0251G3547 Vigna mungo HOM05D002513 ORTHO05D002720 8.2e-06 55.8 103 35.0


User provided reference genes

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