Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.6e-294 1014.2 527 100.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.0e-139 499.6 420 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.6e-127 459.9 370 64.9
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.9e-126 456.4 380 63.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 8.7e-123 444.9 367 63.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-121 441.0 433 57.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.3e-105 387.9 366 58.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.4e-104 384.4 368 56.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.4e-104 384.4 366 57.4
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.4e-104 383.6 367 56.4
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.4e-104 383.6 368 57.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 4.0e-104 382.9 368 57.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 5.3e-104 382.5 361 57.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 5.3e-104 382.5 361 57.6
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.3e-104 382.5 364 57.1
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.9e-104 382.1 368 57.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 6.9e-104 382.1 361 58.4
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 9.0e-104 381.7 361 57.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.5e-103 380.9 361 57.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.5e-103 380.9 393 53.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.5e-103 380.9 368 56.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.5e-103 380.9 368 56.8
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.6e-103 380.2 361 57.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-103 380.2 361 57.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.6e-103 380.2 361 57.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.4e-103 379.8 361 57.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 3.4e-103 379.8 368 56.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 4.5e-103 379.4 420 52.1
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.8e-103 379.0 368 56.2
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 7.6e-103 378.6 369 57.7
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.0e-102 378.3 369 56.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.0e-102 378.3 367 56.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.3e-102 377.9 369 56.4
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.3e-102 377.9 361 56.5
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.3e-102 377.9 360 56.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.7e-102 377.5 368 56.5
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.7e-102 377.5 368 56.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.7e-102 377.5 368 56.8
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.2e-102 377.1 361 56.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-102 377.1 361 56.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.2e-102 377.1 368 56.8
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.8e-102 376.3 371 56.3
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.8e-102 376.3 371 56.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 4.9e-102 375.9 368 56.0
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.9e-102 375.9 369 56.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 8.4e-102 375.2 368 55.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.1e-101 374.8 361 56.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-101 374.0 372 56.2
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.9e-101 374.0 369 56.1
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.9e-101 374.0 370 55.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.5e-101 373.6 368 55.4
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.2e-101 372.9 368 54.9
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 5.5e-101 372.5 361 56.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 7.1e-101 372.1 363 55.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.1e-101 372.1 361 56.5
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.1e-101 372.1 369 57.2
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 9.3e-101 371.7 363 55.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 9.3e-101 371.7 368 55.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 9.3e-101 371.7 369 55.3
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 9.3e-101 371.7 366 56.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.2e-100 371.3 361 56.5
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.2e-100 371.3 369 55.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.6e-100 370.9 366 55.5
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.6e-100 370.9 368 55.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.1e-100 370.5 366 55.2
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.1e-100 370.5 371 54.2
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.7e-100 370.2 427 50.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.5e-100 369.8 361 55.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.5e-100 369.8 369 56.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.5e-100 369.8 368 55.4
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 4.6e-100 369.4 363 55.4
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 4.6e-100 369.4 368 54.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.6e-100 369.4 366 54.6
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 4.6e-100 369.4 368 55.4
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.6e-100 369.4 361 56.5
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 7.9e-100 368.6 369 55.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 7.9e-100 368.6 361 56.2
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.0e-99 368.2 361 56.2
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.0e-99 368.2 368 55.2
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.3e-99 367.9 368 55.2
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.8e-99 367.5 366 56.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.3e-99 367.1 369 54.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.3e-99 367.1 368 55.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.0e-99 366.7 369 54.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 3.0e-99 366.7 361 56.2
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 3.0e-99 366.7 377 53.8
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.1e-99 365.9 361 56.2
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.1e-99 365.9 368 55.4
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.7e-99 365.5 369 54.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.5e-98 364.4 368 54.9
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.9e-98 364.0 361 56.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.5e-98 363.6 458 47.6
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.6e-97 360.9 374 53.7
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.6e-97 360.9 374 53.7
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 3.7e-97 359.8 368 53.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.7e-97 359.8 374 53.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.7e-97 359.8 361 55.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 8.2e-97 358.6 380 53.9
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.1e-96 358.2 390 52.1
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.8e-96 357.5 368 53.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.1e-96 356.7 374 53.2
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.3e-96 355.9 366 51.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.5e-95 354.4 361 54.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.4e-95 353.2 338 55.9
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.3e-94 351.3 403 50.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.4e-94 348.6 361 54.6
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.4e-94 348.6 361 54.6
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.2e-93 346.7 374 53.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.2e-93 346.3 352 55.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-92 344.7 355 54.1
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 6.1e-92 342.4 369 52.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.8e-91 340.9 361 52.9
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.5e-90 337.8 361 53.2
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 9.0e-88 328.6 366 51.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.0e-87 327.4 295 60.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 8.5e-86 322.0 314 56.4
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.3e-81 308.1 309 56.6
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.4e-80 304.7 312 55.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.0e-78 298.5 308 55.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.7e-73 280.0 282 53.9
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.7e-73 280.0 287 56.4
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.8e-73 279.6 297 52.2
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.9e-71 272.7 284 56.7
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.9e-71 272.7 345 49.0
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.2e-61 240.0 283 50.9
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 4.4e-50 203.4 250 50.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.0e-43 180.6 332 39.2
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 3.0e-38 164.1 148 58.1
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 6.0e-31 139.8 345 34.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.3e-29 133.7 128 53.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.9e-25 120.2 165 43.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-23 114.4 99 54.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-21 109.0 86 57.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.7e-20 103.6 90 64.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-18 99.0 68 73.5
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.4e-18 97.4 165 38.8
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.4e-18 97.1 222 35.6
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-16 91.7 114 42.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.3e-13 80.9 76 52.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.6e-13 80.1 523 24.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-10 70.1 86 50.0


User provided reference genes

Program Settings