Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 0.0e+00 2317.0 1169 100.0
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 0.0e+00 1212.6 1195 54.9
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1159.1 1207 51.4
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1154.0 1215 50.9
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1154.0 1222 50.6
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1147.5 1197 50.8
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1143.6 1219 51.0
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1142.1 1214 50.3
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1142.1 1255 49.7
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1141.3 1203 50.5
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1138.6 1216 49.4
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1138.3 1217 51.5
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1137.1 1206 50.1
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1136.3 1214 49.4
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1135.9 1243 49.2
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1135.6 1223 50.9
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1135.2 1206 50.2
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1134.8 1214 49.8
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1134.8 1218 50.9
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1133.6 1203 50.3
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1133.6 1227 49.7
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1133.6 1231 49.4
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1133.2 1236 49.5
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1133.2 1214 50.2
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1132.5 1213 50.1
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1132.1 1242 49.5
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1131.7 1223 51.5
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1131.7 1223 51.5
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1131.3 1213 50.2
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1130.9 1197 49.8
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1129.4 1218 49.9
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1129.0 1200 51.1
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1128.6 1217 49.9
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1128.6 1217 49.9
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1128.6 1203 50.1
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1128.2 1223 50.8
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1127.9 1233 49.4
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1127.9 1210 49.9
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1127.1 1212 49.6
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1125.9 1233 50.1
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1125.9 1241 49.8
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1125.5 1206 50.1
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1125.5 1220 49.4
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1125.2 1223 49.5
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1124.8 1199 49.7
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1124.8 1231 50.0
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1124.8 1209 50.9
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1124.8 1213 50.3
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1124.0 1214 49.8
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1123.6 1210 50.8
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1123.6 1214 49.2
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1123.2 1232 48.5
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1122.8 1225 49.4
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1122.5 1212 49.5
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1120.1 1210 50.9
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1119.4 1238 49.3
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1119.0 1200 50.4
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1119.0 1249 48.8
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1118.2 1210 50.7
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1117.8 1227 49.2
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1117.1 1221 49.6
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1117.1 1212 49.4
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1115.5 1204 49.6
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1114.8 1209 49.0
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1114.8 1215 49.5
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1113.2 1249 48.6
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1112.8 1232 49.0
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1112.8 1207 50.3
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1112.4 1213 50.0
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1111.7 1228 48.6
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1111.3 1212 50.7
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1109.7 1201 48.9
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1109.4 1238 49.1
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1108.6 1233 48.8
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1108.6 1234 49.4
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1108.2 1219 49.4
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1108.2 1223 48.9
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1107.4 1246 48.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1107.4 1223 49.1
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1106.3 1246 48.5
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1106.3 1171 50.7
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1105.5 1236 48.4
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1102.0 1222 49.4
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1098.6 1199 49.3
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1097.4 1198 49.2
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1095.5 1203 48.9
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1095.5 1200 49.3
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1094.3 1205 49.5
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1093.2 1223 48.7
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 8.0e-312 1074.3 1264 48.0
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 8.0e-312 1073.9 1211 49.4
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 4.6e-310 1068.1 1234 47.6
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 6.7e-309 1064.3 1211 48.5
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.9e-308 1062.8 1177 48.8
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 2.6e-305 1052.4 1187 48.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 5.0e-304 1048.1 1191 48.0
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 1.9e-303 1046.2 1345 44.9
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 2.5e-303 1045.8 1286 46.0
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 5.1e-301 1038.1 1227 47.8
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 2.8e-299 1032.3 1166 48.5
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 9.1e-298 1027.3 1125 49.6
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 3.4e-297 1025.4 1279 45.3
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 5.9e-297 1024.6 1205 48.3
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 5.7e-292 1008.1 1214 47.1
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 3.7e-291 1005.4 1268 45.0
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 2.0e-289 999.6 1144 49.5
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 5.2e-285 984.9 1202 45.9
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 8.8e-285 984.2 1198 45.7
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 2.9e-280 969.1 1212 46.0
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 5.0e-280 968.4 1229 44.8
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 6.7e-277 958.0 1081 50.0
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 1.7e-267 926.8 1179 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 2.3e-264 916.4 1019 47.8
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 2.2e-259 899.8 1176 44.6
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 4.0e-253 879.0 1229 42.5
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 1.9e-242 843.6 966 48.9
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 1.2e-241 840.9 965 48.5
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.2e-236 824.3 1016 46.6
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 6.8e-229 798.5 948 46.4
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 5.8e-220 768.8 913 47.3
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 1.7e-203 714.1 916 46.3
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.1e-199 701.4 1028 41.5
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 5.1e-192 676.0 807 47.0
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 2.0e-180 637.5 989 40.3
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 1.6e-164 584.7 680 49.9
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 5.7e-143 513.1 1208 31.5
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 1.3e-123 448.7 543 47.1
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.1e-112 411.0 462 48.9
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 2.0e-111 408.3 485 48.2
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.7e-108 397.9 475 47.2
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 2.3e-91 341.7 479 43.2
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 2.5e-82 311.6 351 51.9
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.5e-79 302.4 386 44.6
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 4.5e-79 300.8 347 47.8
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 2.3e-75 288.5 247 56.3
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 4.2e-69 267.7 338 43.8
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 9.4e-69 266.5 309 51.8
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 1.2e-68 266.2 240 54.6
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 4.6e-68 264.2 236 54.7
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 7.7e-63 246.9 232 52.2
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 3.3e-58 231.5 330 41.5
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 2.5e-45 188.7 198 49.0
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 3.7e-41 174.9 166 48.8
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 1.8e-40 172.6 179 47.5
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 1.6e-39 169.5 237 39.2
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 6.8e-35 154.1 320 34.7
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 4.1e-32 144.8 111 58.6
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 7.0e-32 144.1 114 57.0
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 5.0e-30 137.9 179 41.3
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 4.3e-29 134.8 322 30.7
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 1.4e-24 119.8 366 29.8
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 3.5e-23 115.2 146 43.8
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 5.6e-21 107.8 164 39.0
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 3.6e-20 105.1 115 44.3
Dinv40537 Davidia involucrata HOM05D003523 ORTHO05D004493 8.9e-19 100.5 94 48.9
Psat6g243040 Pisum sativum HOM05D003523 ORTHO05D004493 1.2e-18 100.1 157 34.4
Cpa.g.sc1016.1 Carica papaya HOM05D003523 ORTHO05D004493 2.4e-16 92.4 91 48.4
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 3.2e-16 92.0 95 52.6
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.5e-15 88.6 96 51.0
Psat1g103400 Pisum sativum HOM05D003523 ORTHO05D004493 7.8e-15 87.4 70 55.7
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.1e-13 83.6 63 55.6
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.9e-13 82.8 69 55.1
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 2.5e-13 82.4 69 58.0
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 3.6e-12 78.6 111 42.3
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 1.8e-11 76.3 48 79.2
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 5.2e-11 74.7 74 52.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.5e-10 73.2 90 46.7
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-10 72.8 78 50.0
Psat0s3867g0040 Pisum sativum HOM05D002716 ORTHO05D004493 2.0e-10 72.8 132 38.6
Lsat_1_v5_gn_2_57220 Lactuca sativa HOM05D003523 ORTHO05D004493 1.7e-09 69.7 53 58.5
Lsat_1_v5_gn_5_151900 Lactuca sativa HOM05D003523 ORTHO05D004493 3.7e-09 68.6 53 58.5
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 6.4e-09 67.8 128 39.8
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 1.4e-08 66.6 80 47.5
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 2.4e-08 65.9 38 73.7
Lsat_1_v5_gn_7_49460 Lactuca sativa HOM05D002560 ORTHO05D013255 3.2e-08 65.5 46 58.7
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 3.2e-08 65.5 49 61.2
Cre04.g220600 Chlamydomonas reinhardtii HOM05D003523 ORTHO05D004493 4.1e-08 65.1 105 33.3
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 2.1e-07 62.8 53 58.5
Lsat_1_v5_gn_1_36880 Lactuca sativa HOM05D003523 ORTHO05D004493 2.7e-07 62.4 51 54.9
SEGI_16931 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.5e-07 62.0 67 46.3
Psat1g103240 Pisum sativum HOM05D003523 ORTHO05D001752 7.8e-07 60.8 48 56.2


User provided reference genes

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