Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 0.0e+00 1920.2 935 100.0
Pp3c19_7090 Physcomitrium patens HOM05D011398 ORTHO05D007243 2.1e-305 1052.4 840 61.5
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 9.1e-192 674.9 807 45.7
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 3.2e-152 543.5 792 41.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.0e-142 511.9 554 47.8
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 5.1e-142 509.6 804 37.9
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.6e-140 504.6 810 39.0
HPP92_011748 Vanilla planifolia HOM05D011398 ORTHO05D007243 4.9e-137 493.0 600 45.2
SMO340G0064 Selaginella moellendorffii HOM05D011398 ORTHO05D007243 3.4e-130 470.3 421 55.1
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.6e-103 380.6 556 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 1.0e-94 352.4 638 37.0
SEGI_07802 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 1.7e-57 228.8 171 62.6
SEGI_00057 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 2.3e-54 218.4 198 55.6
SMO197G0086 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 5.8e-37 160.6 227 41.4
SMO197G0005 Selaginella moellendorffii HOM05D011398 ORTHO05D007243 3.2e-35 154.8 214 42.1
HPP92_011769 Vanilla planifolia HOM05D011398 ORTHO05D007243 5.1e-33 147.5 132 56.1
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 6.2e-31 140.6 473 28.3
Zm00001eb283170 Zea mays HOM05D000591 ORTHO05D007243 6.4e-28 130.6 94 58.5
Zm00001eb132950 Zea mays HOM05D000591 ORTHO05D007243 3.2e-27 128.3 94 57.4
SEGI_00619 Sequoiadendron giganteum HOM05D011398 ORTHO05D007243 2.1e-23 115.5 126 50.0
SMO364G0290 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 1.5e-16 92.8 213 32.9
SMO364G0606 Selaginella moellendorffii HOM05D024178 ORTHO05D007243 1.5e-16 92.8 218 33.5
HPP92_011773 Vanilla planifolia HOM05D011398 ORTHO05D007243 8.1e-15 87.0 186 31.7
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 3.5e-10 71.6 130 33.1
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.8e-09 69.3 380 23.2
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 2.3e-09 68.9 125 32.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 8.7e-09 67.0 91 35.2
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 8.7e-09 67.0 91 35.2
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 1.1e-08 66.6 94 29.8
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 1.1e-08 66.6 82 36.6
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 1.5e-08 66.2 230 27.0
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.9e-08 65.9 100 32.0
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 1.9e-08 65.9 186 28.0
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 2.5e-08 65.5 82 36.6
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 2.5e-08 65.5 186 27.4
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 3.3e-08 65.1 90 37.8
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.3e-08 65.1 89 34.8
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 5.6e-08 64.3 92 34.8
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 7.4e-08 63.9 84 34.5
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 7.4e-08 63.9 75 32.0
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 9.6e-08 63.5 112 32.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 9.6e-08 63.5 90 34.4
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.3e-07 63.2 67 37.3
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.3e-07 63.2 66 36.4
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.6e-07 62.8 63 39.7
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.1e-07 62.4 75 32.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 2.1e-07 62.4 104 31.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.8e-07 62.0 143 26.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.8e-07 62.0 75 36.0
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.7e-07 61.6 112 29.5
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 3.7e-07 61.6 90 32.2
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 3.7e-07 61.6 66 33.3
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.7e-07 61.6 67 35.8
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 4.8e-07 61.2 67 35.8
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 4.8e-07 61.2 205 24.4
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 4.8e-07 61.2 66 34.8
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 6.2e-07 60.8 103 31.1
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 8.2e-07 60.5 205 24.4
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 8.2e-07 60.5 183 31.7
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.1e-06 60.1 99 28.3
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-06 60.1 66 34.8
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.1e-06 60.1 63 36.5
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.1e-06 60.1 130 27.7
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.4e-06 59.7 83 30.1
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 1.4e-06 59.7 205 24.4
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 1.4e-06 59.7 205 24.4
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.4e-06 59.7 75 33.3
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 1.4e-06 59.7 102 32.4
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.4e-06 59.7 67 32.8
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.4e-06 59.7 60 33.3
TWI75G0614 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 1.4e-06 59.7 231 26.0
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.8e-06 59.3 205 24.4
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.8e-06 59.3 120 29.2
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.8e-06 59.3 120 29.2
Glyma.11G118500 Glycine max HOM05D003825 ORTHO05D004491 1.8e-06 59.3 155 29.7
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 1.8e-06 59.3 76 34.2
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.8e-06 59.3 66 34.8
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.8e-06 59.3 75 34.7
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.8e-06 59.3 109 32.1
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 2.4e-06 58.9 203 24.6
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 2.4e-06 58.9 87 29.9
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.4e-06 58.9 211 24.6
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 2.4e-06 58.9 156 30.1
Lsat_1_v5_gn_7_89161 Lactuca sativa HOM05D003825 ORTHO05D004491 2.4e-06 58.9 153 30.1
MD16G1225900 Malus domestica HOM05D003335 ORTHO05D003853 2.4e-06 58.9 219 24.2
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 2.4e-06 58.9 96 31.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.4e-06 58.9 73 34.2
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.4e-06 58.9 130 27.7
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 2.4e-06 58.9 81 30.9
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 3.1e-06 58.5 74 32.4
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 3.1e-06 58.5 74 32.4
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 3.1e-06 58.5 60 33.3
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 3.1e-06 58.5 81 30.9
Glyma.12G043900 Glycine max HOM05D003825 ORTHO05D004491 3.1e-06 58.5 155 27.7
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 3.1e-06 58.5 74 35.1
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 3.1e-06 58.5 142 26.8
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 4.0e-06 58.2 67 32.8
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 4.0e-06 58.2 76 34.2
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.0e-06 58.2 77 31.2
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 4.0e-06 58.2 92 33.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 4.0e-06 58.2 66 33.3
PGR004G0877 Punica granatum HOM05D003335 ORTHO05D003853 4.0e-06 58.2 203 23.6
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 4.0e-06 58.2 60 33.3
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 4.0e-06 58.2 66 33.3
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.0e-06 58.2 91 29.7
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.3e-06 57.8 138 26.1
Cfa022344 Carpinus fangiana HOM05D000526 ORTHO05D002053 5.3e-06 57.8 216 21.3
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.3e-06 57.8 77 31.2
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.3e-06 57.8 77 31.2
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.3e-06 57.8 77 31.2
Nn5g29575 Nelumbo nucifera HOM05D003825 ORTHO05D004491 5.3e-06 57.8 155 29.7
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 5.3e-06 57.8 157 29.9
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 5.3e-06 57.8 155 28.4
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 5.3e-06 57.8 97 29.9
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 5.3e-06 57.8 155 28.4
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 5.3e-06 57.8 99 27.3
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 6.9e-06 57.4 60 31.7
arahy.Tifrunner.gnm1.ann1.53VILX Arachis hypogaea HOM05D003825 ORTHO05D004491 6.9e-06 57.4 159 27.0
arahy.Tifrunner.gnm1.ann1.SA4SRM Arachis hypogaea HOM05D003825 ORTHO05D004491 6.9e-06 57.4 153 27.5
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 6.9e-06 57.4 153 30.1
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 6.9e-06 57.4 63 33.3
Duzib052G0149 Durio zibethinus HOM05D003825 ORTHO05D004491 6.9e-06 57.4 154 31.2
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 6.9e-06 57.4 112 28.6
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 6.9e-06 57.4 66 34.8
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 6.9e-06 57.4 96 28.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 6.9e-06 57.4 85 29.4
VMungo1127G1308 Vigna mungo HOM05D003825 ORTHO05D004491 6.9e-06 57.4 154 27.3
AT5G27080 Arabidopsis thaliana HOM05D000526 ORTHO05D000956 9.0e-06 57.0 188 21.8
arahy.Tifrunner.gnm1.ann1.VS3LYX Arachis hypogaea HOM05D003825 ORTHO05D004491 9.0e-06 57.0 155 29.0
CSS0007779 Camellia sinensis var. sinensis HOM05D003825 ORTHO05D004491 9.0e-06 57.0 154 29.9
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 9.0e-06 57.0 66 31.8
CDE12G0828 Ceratophyllum demersum HOM05D000526 ORTHO05D002053 9.0e-06 57.0 183 24.0
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 9.0e-06 57.0 67 29.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 9.0e-06 57.0 66 33.3
Phvul.011G045900 Phaseolus vulgaris HOM05D003825 ORTHO05D004491 9.0e-06 57.0 154 27.3
SGA_v2.0_scaffold58G20541 Striga asiatica HOM05D003825 ORTHO05D004491 9.0e-06 57.0 153 27.5
unitig_60.g25447 Utricularia gibba HOM05D003825 ORTHO05D004491 9.0e-06 57.0 154 31.2


User provided reference genes

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