Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 0.0e+00 1544.6 984 100.0
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.2e-304 1048.5 986 75.4
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 5.4e-110 403.3 878 46.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 2.7e-85 321.2 487 52.2
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.6e-82 312.0 479 47.0
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.1e-82 309.7 605 47.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.1e-81 309.3 500 49.8
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 7.6e-80 303.1 520 46.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.3e-79 302.4 518 45.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 3.8e-79 300.8 517 46.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 3.8e-79 300.8 497 46.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 4.9e-79 300.4 489 48.5
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.1e-78 299.3 497 48.3
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 4.2e-78 297.4 499 44.5
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 7.1e-78 296.6 502 46.0
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 7.1e-78 296.6 514 46.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 9.3e-78 296.2 484 46.1
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 9.3e-78 296.2 514 45.9
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-77 295.0 500 42.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 2.7e-77 294.7 486 46.1
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 2.7e-77 294.7 488 48.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.7e-77 294.7 499 45.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.5e-77 294.3 497 45.1
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 4.6e-77 293.9 514 44.6
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.0e-76 292.7 497 45.3
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 1.0e-76 292.7 487 47.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.3e-76 292.4 509 48.9
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.3e-76 292.4 603 48.8
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.8e-76 292.0 502 47.4
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-76 292.0 502 47.4
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-76 292.0 502 47.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.8e-76 292.0 496 45.6
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.0e-76 291.2 502 45.4
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.9e-76 290.8 492 50.6
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 3.9e-76 290.8 611 45.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 6.7e-76 290.0 492 49.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.7e-76 290.0 500 47.4
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.1e-75 289.3 601 44.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.1e-75 289.3 515 44.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.5e-75 288.9 500 42.6
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.9e-75 288.5 484 41.7
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.5e-75 288.1 492 45.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.5e-75 288.1 489 44.8
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 9.6e-75 286.2 651 46.1
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.3e-74 285.8 501 43.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.3e-74 285.8 512 42.0
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.3e-74 285.8 504 44.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.6e-74 285.4 504 44.6
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 4.8e-74 283.9 504 43.8
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 4.8e-74 283.9 490 49.2
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.8e-73 282.0 518 43.8
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 2.4e-73 281.6 495 43.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.1e-73 281.2 503 45.3
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.1e-73 281.2 490 42.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.3e-73 280.4 496 49.0
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 9.0e-73 279.6 496 49.4
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.0e-73 279.6 609 45.3
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 4.5e-72 277.3 485 44.9
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.8e-72 276.9 493 49.3
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.6e-72 276.6 490 42.0
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 7.6e-72 276.6 510 45.1
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 7.6e-72 276.6 479 39.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 9.9e-72 276.2 485 44.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.7e-71 275.4 495 45.5
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.7e-71 275.4 498 41.6
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.9e-71 274.6 519 43.7
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 4.9e-71 273.9 514 50.8
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 6.4e-71 273.5 613 46.3
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 8.4e-71 273.1 514 50.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.4e-70 272.3 499 49.7
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.4e-70 271.6 514 39.3
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 4.2e-70 270.8 514 38.9
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 5.5e-70 270.4 547 43.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 9.3e-70 269.6 485 44.1
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.1e-69 268.5 517 47.6
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 4.6e-69 267.3 509 46.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 6.0e-69 266.9 514 38.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 6.0e-69 266.9 514 38.9
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 7.9e-69 266.5 516 46.3
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.9e-69 266.5 477 42.1
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.3e-68 265.8 516 38.6
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.3e-68 265.8 498 43.6
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.8e-68 265.4 514 38.7
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.3e-68 265.0 652 42.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 3.0e-68 264.6 510 41.6
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.0e-68 264.6 487 46.6
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.5e-67 262.3 414 43.2
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.9e-67 261.9 497 42.3
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.5e-67 261.5 506 48.0
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.5e-67 261.5 505 45.0
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 5.6e-67 260.4 500 43.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.3e-66 259.2 719 40.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.3e-66 259.2 727 42.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.1e-65 254.6 520 43.7
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.6e-64 251.5 496 46.4
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 7.6e-64 250.0 523 45.7
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.2e-63 248.4 602 41.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 3.8e-63 247.7 246 57.3
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.1e-62 246.1 636 40.6
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.7e-61 241.5 605 41.0
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 4.6e-61 240.7 482 42.7
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 7.9e-61 240.0 446 42.4
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.1e-59 236.1 519 41.6
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.9e-54 218.8 180 62.8
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.6e-53 214.5 499 36.9
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 5.7e-51 207.2 492 39.6
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 4.8e-50 204.1 503 32.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.4e-49 202.6 461 37.5
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 5.9e-48 197.2 412 42.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.1e-41 174.9 224 47.3
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.0e-39 169.9 180 52.2
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-39 169.5 221 48.4
Pp3s450_10 Physcomitrium patens HOM05D005307 ORTHO05D006695 4.2e-30 137.9 77 87.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.3e-28 132.1 96 63.5
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.1e-25 121.3 243 45.7
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 5.3e-25 120.9 366 28.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 9.1e-25 120.2 382 31.2
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.2e-24 119.8 266 45.9
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 6.5e-23 114.0 154 54.5
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.5e-22 112.8 217 47.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.8e-20 105.9 169 44.4
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 4.0e-20 104.8 461 42.3
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 6.3e-18 97.4 121 47.1
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 8.3e-18 97.1 113 46.9
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 4.5e-16 91.3 168 35.7
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.0e-15 90.1 247 38.1
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.6e-15 87.0 146 44.5
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 3.3e-14 85.1 102 47.1
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.3e-12 79.0 98 51.0
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 3.4e-11 75.1 82 51.2
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-10 73.2 102 42.2
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-10 72.0 70 45.7
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 4.1e-09 68.2 58 48.3
MCO16G044 Micromonas commoda HOM05D014086 ORTHO05D006295 5.0e-07 61.2 108 43.5


User provided reference genes

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