Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_13960 Physcomitrium patens HOM05D003084 ORTHO05D003580 4.7e-35 150.6 74 100.0
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 4.8e-19 97.4 66 72.7
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 4.0e-18 94.4 73 65.8
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.3e-16 89.4 73 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.9e-15 85.5 73 58.9
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 2.4e-15 85.1 73 57.5
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 3.2e-15 84.7 73 57.5
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 4.2e-15 84.3 73 56.2
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.2e-14 82.8 73 58.9
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.2e-14 82.8 73 58.9
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.6e-14 82.4 73 57.5
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.6e-14 82.4 73 57.5
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.1e-14 82.0 73 58.9
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 2.7e-14 81.6 73 57.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 2.7e-14 81.6 73 57.5
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 2.7e-14 81.6 73 57.5
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 56.2
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 3.5e-14 81.3 73 57.5
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.5e-14 81.3 71 59.2
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 56.2
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 56.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 4.6e-14 80.9 71 59.2
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 56.2
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 56.2
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 4.6e-14 80.9 73 57.5
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 6.0e-14 80.5 71 57.7
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 6.0e-14 80.5 73 56.2
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 6.0e-14 80.5 71 57.7
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 6.0e-14 80.5 73 56.2
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 6.0e-14 80.5 73 57.5
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 6.0e-14 80.5 73 57.5
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 56.2
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 7.9e-14 80.1 71 57.7
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 57.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 7.9e-14 80.1 73 57.5
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 54.8
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 56.2
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 56.2
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 54.8
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 54.8
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 54.8
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 56.2
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.0e-13 79.7 73 56.2
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 54.8
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 54.8
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 1.3e-13 79.3 73 56.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 2.3e-13 78.6 73 56.2
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 3.0e-13 78.2 73 54.8
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 3.0e-13 78.2 73 54.8
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 3.0e-13 78.2 73 56.2
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 3.9e-13 77.8 73 54.8
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 3.9e-13 77.8 73 54.8
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 3.9e-13 77.8 73 57.5
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 5.1e-13 77.4 68 58.8
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 6.7e-13 77.0 73 54.8
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 8.7e-13 76.6 69 56.5
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.1e-12 76.3 73 53.4
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.1e-12 76.3 71 54.9
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.9e-12 75.5 71 56.3
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.9e-12 75.5 73 54.8
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 2.5e-12 75.1 73 53.4
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 3.3e-12 74.7 73 54.8
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 54.8
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 50.7
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 52.1
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 52.1
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 52.1
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 52.1
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 4.3e-12 74.3 73 52.1
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.6e-12 73.9 73 53.4
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 53.5
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 53.5
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 53.5
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 53.5
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 53.5
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 7.4e-12 73.6 71 54.9
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.3e-11 72.8 71 52.1
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.3e-11 72.8 71 52.1
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 1.3e-11 72.8 73 52.1
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.6e-11 72.4 69 55.1
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.1e-11 72.0 73 52.1
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.1e-11 72.0 73 52.1
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.1e-11 72.0 73 52.1
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 2.8e-11 71.6 73 53.4
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 3.7e-11 71.2 73 52.1
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.7e-11 71.2 73 50.7
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.8e-11 70.9 73 52.1
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 4.8e-11 70.9 71 52.1
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 4.8e-11 70.9 71 52.1
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 4.8e-11 70.9 73 52.1
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 6.2e-11 70.5 73 50.7
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 8.1e-11 70.1 68 55.9
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 8.1e-11 70.1 73 52.1
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 1.1e-10 69.7 58 60.3
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.1e-10 69.7 73 53.4
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.1e-10 69.7 69 53.6
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 4.0e-10 67.8 73 49.3
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 4.0e-10 67.8 64 54.7
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.0e-10 67.8 73 50.7
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 2.0e-09 65.5 68 52.9
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.0e-09 65.5 68 52.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.6e-09 65.1 68 51.5
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 7.6e-09 63.5 73 43.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 7.6e-09 63.5 73 43.8
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 7.6e-09 63.5 73 43.8
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 7.6e-09 63.5 73 43.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.3e-08 62.8 70 45.7
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.7e-08 62.4 73 47.9
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 2.2e-08 62.0 71 46.5
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 6.5e-08 60.5 73 43.8
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.1e-07 59.7 71 47.9
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.5e-07 57.4 71 46.5
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.2e-06 56.2 71 40.8


User provided reference genes

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