Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_8990 Physcomitrium patens HOM05D003157 ORTHO05D004447 0.0e+00 1437.9 800 100.0
Pp3c11_16970 Physcomitrium patens HOM05D003157 ORTHO05D004447 1.4e-217 760.4 812 58.5
Mapoly0100s0042 Marchantia polymorpha HOM05D003157 ORTHO05D004447 2.7e-91 340.9 903 35.5
AagrBONN_evm.TU.Sc2ySwM_228.5109 Anthoceros agrestis HOM05D003157 ORTHO05D004447 3.2e-76 290.8 787 33.4
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 6.0e-67 260.0 769 30.8
Mapoly0039s0051 Marchantia polymorpha HOM05D003157 ORTHO05D004447 9.9e-62 242.7 796 30.7
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 9.3e-60 236.1 787 29.7
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 2.1e-59 235.0 445 34.8
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 3.0e-58 231.1 821 28.5
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 1.1e-57 229.2 851 28.2
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 2.1e-56 224.9 460 33.9
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 2.8e-56 224.6 456 35.5
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 4.8e-56 223.8 461 34.3
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 3.1e-55 221.1 755 28.6
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 3.1e-55 221.1 818 28.5
Os02g0593700 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 3.1e-55 221.1 866 28.4
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 6.9e-55 219.9 815 27.2
Zm00001eb245950 Zea mays HOM05D003157 ORTHO05D004447 3.4e-54 217.6 821 25.9
HPP92_024706 Vanilla planifolia HOM05D003157 ORTHO05D004447 5.8e-54 216.9 799 27.7
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 7.6e-54 216.5 853 27.2
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 1.3e-53 215.7 448 34.6
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 1.3e-53 215.7 832 27.6
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 2.9e-53 214.5 882 27.4
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 2.9e-53 214.5 820 27.0
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 2.9e-53 214.5 819 27.5
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 3.8e-53 214.2 813 27.6
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 6.4e-53 213.4 454 34.6
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 8.4e-53 213.0 812 27.5
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 8.4e-53 213.0 843 26.1
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 1.4e-52 212.2 822 28.1
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 1.9e-52 211.8 825 27.2
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 4.2e-52 210.7 811 26.9
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 5.4e-52 210.3 463 32.6
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 5.4e-52 210.3 788 27.9
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 7.1e-52 209.9 516 32.9
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 7.1e-52 209.9 446 33.0
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 1.2e-51 209.1 469 32.0
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 1.2e-51 209.1 472 32.4
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 1.6e-51 208.8 837 26.9
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 2.1e-51 208.4 832 27.9
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 3.5e-51 207.6 449 33.2
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 4.6e-51 207.2 765 28.1
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 6.0e-51 206.8 560 31.8
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 6.0e-51 206.8 820 27.4
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 6.0e-51 206.8 451 33.0
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 1.0e-50 206.1 767 28.2
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 3.0e-50 204.5 799 28.0
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 3.0e-50 204.5 836 26.3
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 3.0e-50 204.5 847 27.4
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 5.1e-50 203.8 841 26.0
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 5.1e-50 203.8 533 31.0
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 5.1e-50 203.8 826 27.2
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 6.7e-50 203.4 776 27.7
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 6.7e-50 203.4 775 27.6
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 6.7e-50 203.4 808 27.5
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 6.7e-50 203.4 833 27.0
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 6.7e-50 203.4 843 26.0
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 8.7e-50 203.0 796 27.3
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 1.5e-49 202.2 840 27.3
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 1.9e-49 201.8 769 27.2
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 1.9e-49 201.8 792 27.8
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 1.9e-49 201.8 457 31.9
Dinv38527 Davidia involucrata HOM05D003157 ORTHO05D004447 2.5e-49 201.4 451 33.0
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 3.3e-49 201.1 780 27.4
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 3.3e-49 201.1 871 26.2
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 3.3e-49 201.1 838 26.3
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 4.3e-49 200.7 791 27.1
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 7.4e-49 199.9 760 27.2
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 7.4e-49 199.9 447 34.0
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 9.6e-49 199.5 777 28.3
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 9.6e-49 199.5 768 28.6
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 9.6e-49 199.5 452 32.3
THA.LOC104825177 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 1.3e-48 199.1 455 31.2
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 2.1e-48 198.4 865 25.7
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 2.1e-48 198.4 469 31.1
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 2.8e-48 198.0 449 33.6
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 2.8e-48 198.0 443 33.0
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 3.7e-48 197.6 779 28.4
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 3.7e-48 197.6 762 27.6
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 3.7e-48 197.6 580 30.2
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 6.2e-48 196.8 772 27.2
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 1.1e-47 196.1 758 27.4
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 1.1e-47 196.1 562 29.7
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 1.4e-47 195.7 777 28.1
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 1.4e-47 195.7 797 25.7
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 1.4e-47 195.7 822 27.9
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 1.4e-47 195.7 800 25.0
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 1.8e-47 195.3 762 28.0
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 2.4e-47 194.9 441 34.5
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 3.1e-47 194.5 875 27.0
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 4.0e-47 194.1 872 25.5
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 6.9e-47 193.4 771 27.2
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 9.0e-47 193.0 832 26.3
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 9.0e-47 193.0 811 27.9
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 1.2e-46 192.6 793 26.4
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 1.2e-46 192.6 465 31.6
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 1.5e-46 192.2 449 33.6
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 1.5e-46 192.2 847 27.3
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 2.6e-46 191.4 466 29.2
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 2.6e-46 191.4 790 26.7
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 3.4e-46 191.0 477 30.2
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 4.5e-46 190.7 501 29.5
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 7.6e-46 189.9 444 32.9
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 7.6e-46 189.9 842 26.8
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 1.7e-45 188.7 812 26.0
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 1.7e-45 188.7 778 26.7
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 2.2e-45 188.3 580 29.7
Os04g0476800 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 2.2e-45 188.3 466 31.1
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.9e-45 188.0 795 28.4
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 3.8e-45 187.6 769 27.3
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 3.8e-45 187.6 827 27.1
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 3.8e-45 187.6 556 30.6
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 4.9e-45 187.2 817 28.2
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 4.9e-45 187.2 847 26.3
CBR_g19475 Chara braunii HOM05D003157 ORTHO05D004447 6.5e-45 186.8 259 42.5
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 6.5e-45 186.8 797 28.1
HPP92_006279 Vanilla planifolia HOM05D003157 ORTHO05D004447 8.4e-45 186.4 746 25.9
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 1.4e-44 185.7 444 32.7
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.4e-44 185.7 753 27.6
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.9e-44 185.3 825 25.7
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 3.2e-44 184.5 448 30.4
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 3.2e-44 184.5 841 24.9
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 4.2e-44 184.1 787 26.6
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 1.2e-43 182.6 565 28.7
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 1.2e-43 182.6 875 25.1
Potri.012G085450 Populus trichocarpa HOM05D003157 ORTHO05D004447 1.2e-43 182.6 279 37.3
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 1.2e-43 182.6 791 27.6
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.6e-43 182.2 789 27.8
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 1.6e-43 182.2 832 25.6
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 2.1e-43 181.8 809 25.6
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 2.7e-43 181.4 525 28.4
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 3.5e-43 181.0 220 41.8
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 4.6e-43 180.6 806 24.8
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 7.9e-43 179.9 806 24.4
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 1.0e-42 179.5 776 26.7
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 1.3e-42 179.1 837 25.3
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 2.3e-42 178.3 450 30.7
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 3.0e-42 177.9 539 28.6
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 3.9e-42 177.6 815 27.1
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 5.1e-42 177.2 798 26.7
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 8.7e-42 176.4 455 29.2
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 2.5e-41 174.9 230 38.3
COL.COLO4_36761 Corchorus olitorius HOM05D003157 ORTHO05D004447 7.4e-41 173.3 534 28.8
Atru.chr9.2575 Acer truncatum HOM05D003157 ORTHO05D004447 9.6e-41 172.9 357 32.5
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 9.6e-41 172.9 788 25.5
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 4.8e-40 170.6 819 25.6
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 4.8e-40 170.6 528 29.4
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 1.4e-39 169.1 443 32.3
SMO132G0003 Selaginella moellendorffii HOM05D003157 ORTHO05D004447 6.1e-35 153.7 122 60.7
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 1.9e-33 148.7 869 24.5
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 1.1e-31 142.9 528 26.5
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 3.1e-31 141.4 518 26.4
Oeu023452.2 Olea europaea HOM05D003157 ORTHO05D004447 2.5e-28 131.7 286 33.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.2e-27 129.4 160 44.4
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 1.0e-26 126.3 105 51.4
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 2.5e-25 121.7 584 24.7
Mapoly0039s0050 Marchantia polymorpha HOM05D003157 ORTHO05D004447 2.2e-21 108.6 363 27.8
Dinv15230 Davidia involucrata HOM05D003157 ORTHO05D004447 4.2e-20 104.4 442 24.7
Aqoxy3G02978 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 5.5e-20 104.0 137 38.7
SGA_v2.0_scaffold25G10800 Striga asiatica HOM05D003157 ORTHO05D004447 2.1e-19 102.1 147 38.1
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 3.0e-18 98.2 136 36.0
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.1e-17 96.3 112 37.5
Mapoly0039s0049 Marchantia polymorpha HOM05D003157 ORTHO05D011370 8.2e-16 90.1 357 24.1
Zm00001eb079700 Zea mays HOM05D003157 ORTHO05D004447 8.0e-11 73.6 468 21.4
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 2.3e-10 72.0 97 42.3
Pp3c7_9010 Physcomitrium patens HOM05D053621 ORTHO05D050341 5.2e-10 70.9 86 47.7
Pp3c7_9011 Physcomitrium patens HOM05D053621 ORTHO05D050341 5.2e-10 70.9 86 47.7
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 9.7e-09 66.6 91 46.2
Aqoxy328s002 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 2.2e-08 65.5 54 50.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 4.8e-08 64.3 42 57.1
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 6.3e-08 63.9 73 39.7
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.5e-06 58.2 77 36.4
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 4.5e-06 57.8 87 39.1
Zm00001eb127620 Zea mays HOM05D003157 ORTHO05D037866 4.5e-06 57.8 58 48.3


User provided reference genes

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