Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_23110 Physcomitrium patens HOM05D001456 ORTHO05D050362 1.9e-181 639.0 314 100.0
Pp3c11_5100 Physcomitrium patens HOM05D001456 ORTHO05D050362 1.9e-69 266.9 221 62.4
Hma1.2p1_0759F.1_g213950 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 1.0e-09 68.6 133 35.3
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 1.3e-09 68.2 153 34.0
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 2.2e-09 67.4 150 33.3
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.8e-09 66.6 135 34.8
Ah.14g086290 Amaranthus hybridus HOM05D001456 ORTHO05D002799 6.5e-09 65.9 164 31.1
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 6.5e-09 65.9 135 35.6
PSO357G0431 Papaver somniferum HOM05D001456 ORTHO05D002799 6.5e-09 65.9 142 35.2
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 6.5e-09 65.9 149 32.2
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 6.5e-09 65.9 159 32.1
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 8.5e-09 65.5 146 32.9
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 1.1e-08 65.1 136 36.0
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.1e-08 65.1 135 34.8
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 1.1e-08 65.1 152 33.6
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 1.5e-08 64.7 149 32.9
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 1.9e-08 64.3 174 31.6
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.5e-08 63.9 135 35.6
CiPaw.08G083800 Carya illinoinensis HOM05D001456 ORTHO05D002799 2.5e-08 63.9 135 34.8
Nn3g21907 Nelumbo nucifera HOM05D001456 ORTHO05D002799 2.5e-08 63.9 151 32.5
Psat3g018040 Pisum sativum HOM05D001456 ORTHO05D002799 2.5e-08 63.9 155 32.9
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 3.2e-08 63.5 187 29.4
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 3.2e-08 63.5 158 32.9
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 3.2e-08 63.5 143 32.2
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 4.2e-08 63.2 147 34.0
EL10As5g23613 Beta vulgaris HOM05D001456 ORTHO05D002799 4.2e-08 63.2 138 34.1
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 4.2e-08 63.2 138 34.1
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 4.2e-08 63.2 138 34.1
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 4.2e-08 63.2 151 33.1
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 5.5e-08 62.8 135 34.1
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 5.5e-08 62.8 167 31.1
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 5.5e-08 62.8 149 33.6
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 5.5e-08 62.8 161 32.9
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 7.2e-08 62.4 138 31.9
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 7.2e-08 62.4 135 34.1
CAN.G497.101 Capsicum annuum HOM05D001456 ORTHO05D002799 7.2e-08 62.4 138 32.6
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 7.2e-08 62.4 155 32.9
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 7.2e-08 62.4 135 34.8
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 7.2e-08 62.4 144 33.3
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 7.2e-08 62.4 144 33.3
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 7.2e-08 62.4 144 33.3
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 7.2e-08 62.4 135 34.8
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 7.2e-08 62.4 142 33.8
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 9.4e-08 62.0 154 34.4
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 9.4e-08 62.0 154 34.4
Nn3g21913 Nelumbo nucifera HOM05D001456 ORTHO05D002799 9.4e-08 62.0 144 33.3
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 9.4e-08 62.0 142 32.4
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 9.4e-08 62.0 142 32.4
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 9.4e-08 62.0 143 32.9
TPR.G1642 Trifolium pratense HOM05D001456 ORTHO05D002799 9.4e-08 62.0 142 34.5
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 9.4e-08 62.0 144 32.6
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 1.2e-07 61.6 158 32.3
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 1.2e-07 61.6 135 35.6
Gohir.D11G108200 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.2e-07 61.6 137 34.3
Gorai.007G116200 Gossypium raimondii HOM05D001456 ORTHO05D002799 1.2e-07 61.6 137 34.3
Lalb_Chr02g0147591 Lupinus albus HOM05D001456 ORTHO05D002799 1.2e-07 61.6 135 34.1
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.6e-07 61.2 135 34.1
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 1.6e-07 61.2 142 33.8
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.6e-07 61.2 142 33.8
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 1.6e-07 61.2 142 33.8
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 1.6e-07 61.2 142 33.8
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.6e-07 61.2 135 34.1
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 1.6e-07 61.2 135 34.1
Atru.chr5.892 Acer truncatum HOM05D001456 ORTHO05D002799 2.1e-07 60.8 151 33.1
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 2.1e-07 60.8 139 32.4
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 2.1e-07 60.8 151 34.4
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 2.1e-07 60.8 142 33.8
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 2.1e-07 60.8 142 31.7
Ca_09277_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 2.1e-07 60.8 133 35.3
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 2.1e-07 60.8 142 33.8
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 2.1e-07 60.8 151 33.8
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 2.1e-07 60.8 151 33.8
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 2.1e-07 60.8 154 33.1
TAR636G1258 Trochodendron aralioides HOM05D001456 ORTHO05D002799 2.1e-07 60.8 142 33.8
Actinidia01663 Actinidia chinensis HOM05D001456 ORTHO05D002799 2.7e-07 60.5 151 31.8
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 2.7e-07 60.5 150 33.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.7e-07 60.5 135 34.1
CARHR274920 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.7e-07 60.5 154 33.1
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 2.7e-07 60.5 150 32.7
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 2.7e-07 60.5 141 32.6
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 2.7e-07 60.5 135 33.3
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.7e-07 60.5 133 34.6
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 2.7e-07 60.5 135 34.1
QL12p034495 Quercus lobata HOM05D001456 ORTHO05D002799 2.7e-07 60.5 142 33.1
Sabra13G0002600 Salix brachista HOM05D001456 ORTHO05D002799 2.7e-07 60.5 135 33.3
Solyc01g101140.4 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.7e-07 60.5 133 34.6
Ah.11g045840 Amaranthus hybridus HOM05D001456 ORTHO05D002799 3.6e-07 60.1 135 33.3
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 3.6e-07 60.1 173 31.2
Cpa.g.sc519.4 Carica papaya HOM05D001456 ORTHO05D002799 3.6e-07 60.1 142 33.1
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 3.6e-07 60.1 151 32.5
FAN19G2030 Fragaria x ananassa HOM05D001456 ORTHO05D002799 3.6e-07 60.1 135 34.1
FAN26G2486 Fragaria x ananassa HOM05D001456 ORTHO05D002799 3.6e-07 60.1 135 34.1
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 3.6e-07 60.1 142 34.5
Hma1.2p1_3304F.1_g335090 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 3.6e-07 60.1 151 30.5
Lj9A230G20 Lonicera japonica HOM05D001456 ORTHO05D002799 3.6e-07 60.1 151 32.5
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 3.6e-07 60.1 151 32.5
PSO170G0651 Papaver somniferum HOM05D001456 ORTHO05D002799 3.6e-07 60.1 173 31.2
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 3.6e-07 60.1 133 34.6
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 3.6e-07 60.1 141 33.3
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 3.6e-07 60.1 141 33.3
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 3.6e-07 60.1 142 33.8
Sopen01g044590 Solanum pennellii HOM05D001456 ORTHO05D002799 3.6e-07 60.1 133 34.6
PGSC0003DMG400018288 Solanum tuberosum HOM05D001456 ORTHO05D002799 3.6e-07 60.1 133 34.6
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 3.6e-07 60.1 135 33.3
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 4.7e-07 59.7 142 33.1
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 4.7e-07 59.7 142 33.1
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 4.7e-07 59.7 142 33.1
CARHR274910 Cardamine hirsuta HOM05D001456 ORTHO05D002799 4.7e-07 59.7 150 32.0
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 4.7e-07 59.7 144 31.2
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 4.7e-07 59.7 133 34.6
MD17G1283700 Malus domestica HOM05D001456 ORTHO05D002799 4.7e-07 59.7 135 34.1
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 4.7e-07 59.7 142 33.1
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 4.7e-07 59.7 133 34.6
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 4.7e-07 59.7 142 33.1
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.7e-07 59.7 143 31.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.7e-07 59.7 145 31.7
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 6.1e-07 59.3 211 29.4
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 6.1e-07 59.3 170 32.4
Gohir.A11G103800 Gossypium hirsutum HOM05D001456 ORTHO05D002799 6.1e-07 59.3 137 33.6
Lj1g0004173 Lotus japonicus HOM05D001456 ORTHO05D002799 6.1e-07 59.3 133 33.8
Medtr7g110390 Medicago truncatula HOM05D001456 ORTHO05D002799 6.1e-07 59.3 138 31.9
Potri.013G003100 Populus trichocarpa HOM05D001456 ORTHO05D002799 6.1e-07 59.3 137 32.1
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 6.1e-07 59.3 135 34.1
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 8.0e-07 58.9 174 31.0
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 8.0e-07 58.9 138 33.3
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 8.0e-07 58.9 141 32.6
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.0e-06 58.5 135 32.6
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 1.0e-06 58.5 145 31.0
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 1.0e-06 58.5 134 32.8
HanXRQChr09g0270991 Helianthus annuus HOM05D001456 ORTHO05D002799 1.0e-06 58.5 140 33.6
Lj5C319T15 Lonicera japonica HOM05D001456 ORTHO05D002799 1.0e-06 58.5 133 33.8
Nitab4.5_0005904g0040 Nicotiana tabacum HOM05D001456 ORTHO05D002799 1.0e-06 58.5 140 33.6
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 1.0e-06 58.5 134 33.6
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 1.0e-06 58.5 140 33.6
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 1.0e-06 58.5 135 34.1
SGA_v2.0_scaffold5G02913 Striga asiatica HOM05D001456 ORTHO05D002799 1.0e-06 58.5 133 32.3
ECA236G0747 Erigeron canadensis HOM05D001456 ORTHO05D002799 1.4e-06 58.2 133 33.8
Lsat_1_v5_gn_9_77400 Lactuca sativa HOM05D001456 ORTHO05D002799 1.4e-06 58.2 140 33.6
Rhsim05G0122100 Rhododendron simsii HOM05D001456 ORTHO05D002799 1.4e-06 58.2 134 33.6
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 1.4e-06 58.2 142 31.7
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 1.4e-06 58.2 142 31.7
Solyc02g088880.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.4e-06 58.2 159 30.8
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 1.4e-06 58.2 134 33.6
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 1.8e-06 57.8 228 26.8
MSTRG.20358 Avicennia marina HOM05D001456 ORTHO05D002799 1.8e-06 57.8 133 33.1
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 1.8e-06 57.8 135 32.6
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-06 57.8 141 32.6
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 1.8e-06 57.8 135 32.6
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 1.8e-06 57.8 143 32.2
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.8e-06 57.8 138 33.3
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 1.8e-06 57.8 160 31.2
Potri.013G003301 Populus trichocarpa HOM05D001456 ORTHO05D002799 1.8e-06 57.8 135 31.9
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 1.8e-06 57.8 141 32.6
Aa31LG11G2170 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.3e-06 57.4 135 31.9
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 2.3e-06 57.4 154 29.9
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.3e-06 57.4 150 32.7
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.3e-06 57.4 141 33.3
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 3.0e-06 57.0 137 32.8
AUR62002684 Chenopodium quinoa HOM05D001456 ORTHO05D002799 3.0e-06 57.0 139 33.1
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 3.0e-06 57.0 140 32.9
PGSC0003DMG400001457 Solanum tuberosum HOM05D001456 ORTHO05D002799 3.0e-06 57.0 176 27.8
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 4.0e-06 56.6 138 31.2
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 4.0e-06 56.6 135 32.6
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 4.0e-06 56.6 140 33.6
BcaC04g23460 Brassica carinata HOM05D001456 ORTHO05D002799 5.2e-06 56.2 135 34.1
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 5.2e-06 56.2 135 31.9
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 5.2e-06 56.2 135 31.9
C09p08100 Brassica napus HOM05D001456 ORTHO05D002799 5.2e-06 56.2 135 34.1
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 5.2e-06 56.2 135 31.9
BolC9t53724H Brassica oleracea HOM05D001456 ORTHO05D002799 5.2e-06 56.2 135 34.1
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 5.2e-06 56.2 140 33.6
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 5.2e-06 56.2 139 31.7
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 5.2e-06 56.2 139 31.7
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.2e-06 56.2 135 33.3
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 5.2e-06 56.2 139 32.4
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 6.7e-06 55.8 135 31.9
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 6.7e-06 55.8 135 31.9
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 6.7e-06 55.8 135 31.9
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 6.7e-06 55.8 141 32.6
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 6.7e-06 55.8 135 33.3
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 6.7e-06 55.8 144 31.9
AT5G61180 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 8.8e-06 55.5 167 31.7
A09p07250 Brassica napus HOM05D001456 ORTHO05D002799 8.8e-06 55.5 135 33.3
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 8.8e-06 55.5 151 32.5


User provided reference genes

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