Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_5440 Physcomitrium patens HOM05D002762 ORTHO05D004643 6.9e-62 240.4 113 100.0
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 2.9e-28 128.6 84 76.2
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 5.8e-16 87.8 112 43.8
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 2.9e-15 85.5 95 47.4
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 5.4e-14 81.3 105 41.0
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 2.0e-13 79.3 83 47.0
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 3.5e-13 78.6 88 45.5
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 4.6e-13 78.2 105 41.0
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 6.6e-12 74.3 89 42.7
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 6.6e-12 74.3 96 42.7
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 8.6e-12 73.9 89 43.8
MBI19_g20287_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 1.1e-11 73.6 96 42.7
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 1.1e-11 73.6 91 42.9
Pp3c20_20740 Physcomitrium patens HOM05D011912 ORTHO05D004643 1.5e-11 73.2 61 62.3
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 1.5e-11 73.2 89 42.7
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 1.9e-11 72.8 96 40.6
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 1.9e-11 72.8 96 40.6
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 1.9e-11 72.8 89 40.4
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 3.3e-11 72.0 88 44.3
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 3.3e-11 72.0 96 40.6
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 3.3e-11 72.0 96 42.7
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 4.3e-11 71.6 88 39.8
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 4.3e-11 71.6 85 44.7
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 4.3e-11 71.6 91 40.7
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 4.3e-11 71.6 88 42.0
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 4.3e-11 71.6 97 39.2
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 5.6e-11 71.2 96 38.5
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 7.3e-11 70.9 88 43.2
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 9.5e-11 70.5 89 42.7
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 9.5e-11 70.5 88 40.9
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 9.5e-11 70.5 96 38.5
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 9.5e-11 70.5 96 38.5
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.2e-10 70.1 88 40.9
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 1.6e-10 69.7 89 38.2
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 1.6e-10 69.7 88 42.0
Solyc06g054430.1 Solanum lycopersicum HOM05D002762 ORTHO05D004643 1.6e-10 69.7 88 40.9
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 2.1e-10 69.3 87 41.4
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 2.1e-10 69.3 95 43.2
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.1e-10 69.3 95 43.2
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.1e-10 69.3 95 43.2
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 2.1e-10 69.3 102 40.2
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 2.1e-10 69.3 88 39.8
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 2.1e-10 69.3 88 39.8
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 2.8e-10 68.9 96 42.7
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 3.6e-10 68.6 87 42.5
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.6e-10 68.6 90 40.0
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.6e-10 68.6 90 40.0
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 4.7e-10 68.2 88 39.8
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 4.7e-10 68.2 91 42.9
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 4.7e-10 68.2 94 38.3
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 4.7e-10 68.2 89 38.2
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 6.2e-10 67.8 81 45.7
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 6.2e-10 67.8 88 38.6
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 6.2e-10 67.8 95 41.1
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 6.2e-10 67.8 109 38.5
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 6.2e-10 67.8 88 40.9
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 6.2e-10 67.8 88 42.0
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 6.2e-10 67.8 88 42.0
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 8.1e-10 67.4 93 39.8
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 8.1e-10 67.4 87 43.7
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 1.1e-09 67.0 89 40.4
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 1.1e-09 67.0 93 39.8
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 1.1e-09 67.0 88 42.0
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.1e-09 67.0 88 42.0
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.1e-09 67.0 88 39.8
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 1.4e-09 66.6 89 40.4
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 1.4e-09 66.6 86 43.0
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 1.4e-09 66.6 88 40.9
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 1.4e-09 66.6 87 42.5
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.8e-09 66.2 88 37.5
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.8e-09 66.2 88 37.5
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 3.1e-09 65.5 95 37.9
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 3.1e-09 65.5 97 39.2
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 3.1e-09 65.5 87 39.1
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 3.1e-09 65.5 87 41.4
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 4.0e-09 65.1 87 42.5
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 4.0e-09 65.1 87 41.4
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 4.0e-09 65.1 88 38.6
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 5.2e-09 64.7 89 38.2
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 5.2e-09 64.7 96 41.7
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 5.2e-09 64.7 89 37.1
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 6.8e-09 64.3 108 38.0
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 6.8e-09 64.3 85 40.0
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 6.8e-09 64.3 89 37.1
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 8.9e-09 63.9 83 41.0
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 1.2e-08 63.5 87 41.4
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 1.5e-08 63.2 87 39.1
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 3.4e-08 62.0 87 42.5
Cpa.g.c35915 Carica papaya HOM05D002762 ORTHO05D004643 3.4e-08 62.0 85 38.8
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 4.4e-08 61.6 96 38.5
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 9.9e-08 60.5 82 37.8
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.7e-07 59.7 87 40.2
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 2.2e-07 59.3 87 39.1
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 2.2e-07 59.3 87 40.2
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 2.2e-07 59.3 85 38.8
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 2.9e-07 58.9 87 40.2
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 2.9e-07 58.9 87 40.2
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 3.7e-07 58.5 93 39.8
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 3.7e-07 58.5 93 40.9
CARHR222230 Cardamine hirsuta HOM05D002762 ORTHO05D004643 4.9e-07 58.2 87 37.9
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 4.9e-07 58.2 93 39.8
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 4.9e-07 58.2 91 39.6
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 6.4e-07 57.8 87 37.9
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 1.1e-06 57.0 82 41.5
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.1e-06 57.0 87 37.9
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 1.1e-06 57.0 93 37.6
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 1.4e-06 56.6 87 36.8
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 2.4e-06 55.8 87 36.8
HanXRQChr11g0325861 Helianthus annuus HOM05D002762 ORTHO05D004643 2.4e-06 55.8 80 38.8
Pp3c20_20750 Physcomitrium patens HOM05D002762 ORTHO05D004643 5.4e-06 54.7 38 71.1


User provided reference genes

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