Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.3e-182 642.9 328 100.0
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 3.2e-35 153.3 278 36.0
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 4.7e-34 149.4 341 31.7
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 2.0e-32 144.1 324 33.3
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 4.4e-32 142.9 295 32.2
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 4.4e-32 142.9 319 32.3
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 1.3e-31 141.4 265 37.0
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 2.2e-31 140.6 273 34.4
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 2.2e-31 140.6 314 32.2
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 1.1e-30 138.3 284 34.9
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.1e-30 138.3 306 33.0
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 2.4e-30 137.1 267 35.2
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 3.1e-30 136.7 271 35.1
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 4.1e-30 136.3 299 32.1
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 5.4e-30 136.0 270 34.1
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 5.4e-30 136.0 365 31.0
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 7.0e-30 135.6 313 31.9
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 9.1e-30 135.2 314 30.9
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 1.2e-29 134.8 270 34.8
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 1.6e-29 134.4 271 33.2
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 1.6e-29 134.4 349 30.4
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 2.0e-29 134.0 309 32.4
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 2.7e-29 133.7 317 30.6
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 3.5e-29 133.3 308 31.5
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 4.5e-29 132.9 317 30.6
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 4.5e-29 132.9 317 30.6
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 4.5e-29 132.9 298 33.2
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 7.7e-29 132.1 270 36.3
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 1.0e-28 131.7 267 34.8
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 1.3e-28 131.3 298 33.6
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 1.7e-28 131.0 311 32.5
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 2.2e-28 130.6 262 33.6
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 2.2e-28 130.6 308 31.8
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 2.2e-28 130.6 304 31.2
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 2.2e-28 130.6 286 33.9
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 2.9e-28 130.2 318 30.2
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 2.9e-28 130.2 308 30.8
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 3.8e-28 129.8 319 30.1
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 3.8e-28 129.8 264 36.0
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 5.0e-28 129.4 270 33.3
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 6.5e-28 129.0 270 30.7
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 6.5e-28 129.0 293 32.4
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 6.5e-28 129.0 308 30.8
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 8.5e-28 128.6 268 35.1
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 8.5e-28 128.6 266 32.7
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 8.5e-28 128.6 308 30.8
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 8.5e-28 128.6 272 32.0
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 1.1e-27 128.3 272 32.7
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 1.1e-27 128.3 303 32.0
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 1.1e-27 128.3 272 32.4
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 1.9e-27 127.5 275 31.6
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 2.5e-27 127.1 268 34.7
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 2.5e-27 127.1 273 34.8
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 3.2e-27 126.7 269 35.3
Pp3c6_5440 Physcomitrium patens HOM05D002762 ORTHO05D004643 4.2e-27 126.3 84 76.2
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 5.5e-27 125.9 262 35.1
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 9.5e-27 125.2 308 30.8
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 9.5e-27 125.2 262 34.7
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 9.5e-27 125.2 286 32.2
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 1.2e-26 124.8 277 33.2
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 2.1e-26 124.0 310 32.3
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 2.8e-26 123.6 273 32.2
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 3.6e-26 123.2 257 35.4
Pp3c20_15890 Physcomitrium patens HOM05D011912 ORTHO05D014147 3.6e-26 123.2 156 47.4
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 4.7e-26 122.9 273 32.2
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 4.7e-26 122.9 265 32.8
Pp3c6_5500 Physcomitrium patens HOM05D011912 ORTHO05D004643 6.1e-26 122.5 255 36.5
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 8.0e-26 122.1 272 33.5
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.0e-25 121.7 272 33.1
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.4e-25 121.3 264 31.1
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.8e-25 120.9 271 32.1
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.8e-25 120.9 306 29.4
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 2.3e-25 120.6 332 29.2
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 2.3e-25 120.6 259 34.0
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 5.2e-25 119.4 252 32.1
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 6.8e-25 119.0 262 32.1
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.2e-24 118.2 262 32.8
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 1.2e-24 118.2 278 30.6
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 1.2e-24 118.2 271 31.7
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.5e-24 117.9 259 33.2
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 2.0e-24 117.5 313 30.7
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 2.2e-23 114.0 262 33.2
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 8.3e-23 112.1 257 30.7
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 8.3e-23 112.1 337 28.2
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 1.1e-22 111.7 280 30.4
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 1.4e-22 111.3 294 29.6
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 1.4e-22 111.3 268 29.9
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 2.4e-22 110.5 257 31.1
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 2.4e-22 110.5 272 31.2
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 2.4e-22 110.5 251 31.1
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 2.4e-22 110.5 273 31.9
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 4.1e-22 109.8 248 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 1.2e-21 108.2 309 30.1
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.2e-21 108.2 257 31.5
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 1.6e-21 107.8 257 31.1
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 2.0e-21 107.5 275 29.5
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 5.9e-21 105.9 282 29.8
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 5.9e-21 105.9 282 29.8
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 1.0e-20 105.1 331 26.0
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 1.3e-20 104.8 282 29.8
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 2.3e-20 104.0 290 29.3
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 3.8e-20 103.2 257 30.4
Pp3c20_20740 Physcomitrium patens HOM05D011912 ORTHO05D004643 1.9e-19 100.9 109 55.0
Dinv44461 Davidia involucrata HOM05D002762 ORTHO05D004643 2.8e-18 97.1 268 28.7
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 3.6e-18 96.7 415 26.0
CSS0041788 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 6.8e-17 92.4 149 37.6
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 6.8e-17 92.4 283 28.3
Pp3c6_8180 Physcomitrium patens HOM05D011912 ORTHO05D014147 2.6e-16 90.5 125 46.4
Os10g0148800 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 7.5e-16 89.0 334 26.9
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 1.3e-15 88.2 149 39.6
MBI19_g20287_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 1.7e-15 87.8 186 34.4
Lalb_Chr18g0055921 Lupinus albus HOM05D002762 ORTHO05D004643 1.1e-14 85.1 169 34.9
Pp3c6_5660 Physcomitrium patens HOM05D011912 ORTHO05D014147 5.9e-13 79.3 120 49.2
Solyc06g054440.2 Solanum lycopersicum HOM05D002762 ORTHO05D004643 3.0e-12 77.0 185 30.3
Pp3c6_11910 Physcomitrium patens HOM05D011912 ORTHO05D014147 5.6e-11 72.8 71 57.7
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 1.2e-10 71.6 287 23.0
Pp3c3_35930 Physcomitrium patens HOM05D058928 ORTHO05D014147 3.6e-10 70.1 63 60.3
Solyc06g054430.1 Solanum lycopersicum HOM05D002762 ORTHO05D004643 1.4e-09 68.2 84 39.3
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 2.3e-09 67.4 146 30.1
CSS0016618 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 4.0e-09 66.6 216 25.0
HanXRQChr11g0325871 Helianthus annuus HOM05D002762 ORTHO05D004643 5.2e-09 66.2 134 32.8
Pp3c6_5960 Physcomitrium patens HOM05D002762 ORTHO05D004643 8.9e-09 65.5 101 43.6
Pp3c3_35860 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.5e-08 64.7 56 58.9
Oeu013243.1 Olea europaea HOM05D001905 ORTHO05D001820 2.6e-08 63.9 370 23.5
Pp3c6_5570 Physcomitrium patens HOM05D011912 ORTHO05D014147 2.6e-08 63.9 61 55.7
Pp3c20_20820 Physcomitrium patens HOM05D011912 ORTHO05D014147 3.4e-08 63.5 61 57.4
Pp3c6_5640 Physcomitrium patens HOM05D056413 ORTHO05D310491 5.8e-08 62.8 39 76.9
SalBow5G3486 Salvia bowleyana HOM05D001905 ORTHO05D001820 5.8e-08 62.8 364 22.0
SalBow5G5277 Salvia bowleyana HOM05D001905 ORTHO05D001820 7.5e-08 62.4 370 22.4
Pp3c20_20750 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.3e-07 61.6 38 78.9
Glyma.15G101100 Glycine max HOM05D002762 ORTHO05D004643 1.7e-07 61.2 137 29.9
MBI19_g20289_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 1.7e-07 61.2 67 46.3
Oeu014785.1 Olea europaea HOM05D001905 ORTHO05D001820 1.7e-07 61.2 335 23.0
Pp3c20_15990 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.7e-07 61.2 53 60.4
Pp3c9_16320 Physcomitrium patens HOM05D011912 ORTHO05D014147 2.9e-07 60.5 59 55.9
SEGI_14723 Sequoiadendron giganteum HOM05D001905 ORTHO05D001820 3.7e-07 60.1 303 26.1
MSTRG.2859 Avicennia marina HOM05D001905 ORTHO05D001820 8.3e-07 58.9 387 21.2
Carub.0006s2650 Capsella rubella HOM05D001905 ORTHO05D001820 8.3e-07 58.9 387 23.3
Cpa.g.c35915 Carica papaya HOM05D002762 ORTHO05D004643 1.4e-06 58.2 84 35.7
Pp3c3_35880 Physcomitrium patens HOM05D058928 ORTHO05D014147 1.4e-06 58.2 53 62.3
Actinidia22657 Actinidia chinensis HOM05D001905 ORTHO05D001820 5.4e-06 56.2 362 24.0
AL6G41300 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 5.4e-06 56.2 383 21.7
HanXRQChr11g0325861 Helianthus annuus HOM05D002762 ORTHO05D004643 7.0e-06 55.8 82 36.6
SGA_v2.0_scaffold70G23572 Striga asiatica HOM05D001905 ORTHO05D001820 9.2e-06 55.5 374 22.2


User provided reference genes

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