Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 7.5e-256 886.7 461 100.0
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 9.3e-97 358.2 445 45.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 9.3e-97 358.2 457 45.3
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.6e-96 355.9 451 45.0
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.3e-95 354.4 469 44.6
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.3e-95 353.6 469 43.7
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 6.7e-95 352.1 458 45.4
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 6.7e-95 352.1 455 44.4
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 8.7e-95 351.7 386 49.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.1e-94 351.3 387 48.6
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.1e-94 351.3 455 44.2
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.9e-94 350.5 383 48.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.3e-94 349.4 394 48.7
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 5.7e-94 349.0 480 44.0
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.4e-94 348.6 450 44.7
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 9.6e-94 348.2 466 43.8
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.8e-93 346.7 450 44.7
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.8e-93 345.9 387 48.6
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.3e-93 345.5 482 42.1
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-92 344.7 463 45.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.4e-92 344.4 388 47.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.4e-92 344.4 491 42.4
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-92 344.0 483 42.4
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.8e-92 344.0 469 43.1
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.1e-92 343.2 454 44.3
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.1e-92 343.2 472 42.6
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.2e-91 341.3 476 42.4
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.2e-91 341.3 473 42.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.0e-91 340.5 471 42.5
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.4e-91 339.7 388 47.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.9e-91 339.0 449 43.2
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 5.9e-91 339.0 450 43.8
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 7.6e-91 338.6 473 42.7
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 7.6e-91 338.6 464 44.2
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.0e-90 338.2 488 40.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.3e-90 337.8 449 44.1
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.7e-90 337.4 484 41.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.7e-90 337.4 447 43.0
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.7e-90 337.4 467 42.4
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.9e-90 336.7 387 47.3
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 3.8e-90 336.3 486 43.0
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 5.0e-90 335.9 382 48.2
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 6.5e-90 335.5 463 44.1
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.5e-90 335.5 449 42.8
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 6.5e-90 335.5 460 43.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.4e-89 334.3 458 42.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.5e-89 333.6 474 42.0
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 2.5e-89 333.6 458 43.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.5e-89 333.6 460 43.0
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.2e-89 332.8 482 41.5
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 4.2e-89 332.8 490 41.6
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 7.2e-89 332.0 467 41.1
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.2e-88 331.3 380 46.6
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.6e-88 330.9 385 46.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.6e-88 330.9 385 47.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.7e-88 330.1 477 41.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.7e-88 330.1 384 47.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 3.6e-88 329.7 454 41.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 3.6e-88 329.7 466 42.1
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.6e-88 329.3 481 43.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 4.6e-88 329.3 427 44.0
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.0e-87 328.2 383 47.3
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.0e-87 328.2 473 42.7
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 2.3e-87 327.0 461 43.8
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.0e-87 326.6 471 41.8
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 3.9e-87 326.2 382 47.1
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 3.9e-87 326.2 456 42.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.1e-87 325.9 396 46.5
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 8.7e-87 325.1 386 45.1
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-86 324.7 486 41.4
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.5e-86 324.3 488 41.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.5e-86 324.3 474 40.7
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.9e-86 323.9 391 44.0
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.9e-86 323.9 385 46.5
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.9e-86 323.9 489 41.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.5e-86 323.6 459 41.8
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 4.3e-86 322.8 472 42.8
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.3e-86 322.8 384 45.6
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.4e-86 322.0 477 41.1
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.4e-86 322.0 384 45.3
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.3e-85 321.2 379 45.6
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-85 320.9 385 45.7
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.6e-85 320.9 386 46.9
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.7e-85 319.7 391 45.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.8e-85 319.3 384 46.1
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 6.3e-85 318.9 387 46.3
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 6.3e-85 318.9 384 45.6
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.2e-85 318.5 384 45.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.2e-85 318.5 384 45.3
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.1e-84 318.2 473 39.7
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-84 317.8 385 45.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.4e-84 317.8 383 46.7
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.8e-84 317.4 387 46.0
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.4e-84 317.0 385 45.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.4e-84 317.0 472 41.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 3.1e-84 316.6 387 46.0
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 4.1e-84 316.2 385 45.5
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 4.1e-84 316.2 474 39.9
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 9.1e-84 315.1 407 43.2
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.6e-83 313.5 487 39.6
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.4e-83 313.2 389 44.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 3.4e-83 313.2 385 45.5
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 4.5e-83 312.8 458 41.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 5.9e-83 312.4 479 40.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 5.9e-83 312.4 445 41.8
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 5.9e-83 312.4 384 43.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 5.9e-83 312.4 459 41.8
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 7.7e-83 312.0 386 43.3
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.7e-82 310.8 479 39.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.7e-82 310.8 385 44.2
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.7e-82 310.8 466 39.7
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 2.2e-82 310.5 465 39.6
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.9e-82 310.1 445 41.3
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.8e-82 309.7 399 42.9
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 3.8e-82 309.7 384 45.1
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 6.5e-82 308.9 474 39.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-81 307.4 478 41.0
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.9e-81 307.4 385 45.2
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 3.2e-81 306.6 470 39.8
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.2e-81 306.6 383 44.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.5e-81 305.8 457 41.1
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.5e-81 305.8 398 42.7
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 5.5e-81 305.8 384 43.2
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 7.2e-81 305.4 464 39.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 9.4e-81 305.1 482 40.0
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-80 304.7 403 42.7
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.6e-80 304.3 308 50.3
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 2.1e-80 303.9 475 39.2
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.6e-80 303.1 466 39.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-79 301.6 389 43.4
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.4e-79 301.2 385 43.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.8e-79 300.8 449 41.6
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.6e-78 297.0 468 40.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.3e-78 296.6 448 39.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 5.7e-78 295.8 498 37.6
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 5.7e-78 295.8 384 42.2
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 9.7e-78 295.0 384 44.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.7e-77 294.3 382 44.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 4.8e-77 292.7 337 45.1
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.3e-77 292.4 389 42.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-76 291.6 446 39.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.4e-76 291.2 450 39.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.8e-76 290.8 335 45.4
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.4e-76 290.4 459 38.8
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.0e-75 287.3 385 43.1
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.4e-71 274.6 422 40.3
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.3e-70 270.0 281 45.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.1e-68 265.0 403 38.5
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.8e-58 229.9 336 41.4
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.2e-57 226.5 383 37.9
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.1e-56 224.2 249 45.4
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-56 224.2 270 45.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 2.0e-46 191.0 451 32.6
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.2e-40 171.8 191 50.8
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 8.9e-31 139.0 339 32.7
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.9e-28 131.3 195 40.5
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.7e-26 124.8 244 34.8
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 3.9e-26 123.6 236 35.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.5e-25 120.9 147 43.5
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 7.3e-25 119.4 115 47.0
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.6e-22 110.9 91 54.9
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.1e-20 105.5 399 27.1
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 8.6e-18 95.9 130 46.2
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.5e-17 94.4 146 44.5
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.8e-16 90.9 137 40.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.3e-13 82.0 97 43.3
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.2e-12 77.4 129 38.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 5.1e-10 70.1 167 30.5
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 5.1e-10 70.1 167 30.5
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 8.7e-10 69.3 95 38.9
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.4e-07 62.0 70 34.3
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.1e-07 60.8 131 31.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 4.0e-07 60.5 51 47.1


User provided reference genes

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