Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 0.0e+00 1166.8 572 100.0
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 4.9e-196 688.3 518 63.9
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 4.6e-194 681.8 473 68.7
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 3.9e-193 678.7 507 63.1
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.5e-186 655.6 486 63.8
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.1e-184 650.6 487 63.4
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.4e-182 643.7 470 64.5
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.8e-182 643.3 475 63.4
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 5.2e-182 641.7 469 64.6
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 3.4e-181 639.0 471 64.8
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 7.6e-181 637.9 483 62.3
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 9.9e-181 637.5 467 64.9
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 1.3e-180 637.1 471 63.9
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 1.7e-180 636.7 498 61.6
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 1.7e-180 636.7 496 62.3
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 3.2e-179 632.5 473 63.0
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 9.2e-179 630.9 488 62.5
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 3.5e-178 629.0 489 61.8
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 4.6e-178 628.6 481 62.8
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 7.8e-178 627.9 477 62.1
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.0e-177 627.5 494 60.5
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.3e-177 627.1 490 61.4
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 2.3e-177 626.3 494 60.3
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 2.3e-177 626.3 477 61.8
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 2.3e-177 626.3 475 61.9
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 2.3e-177 626.3 467 63.4
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.9e-177 625.5 476 61.3
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 3.9e-177 625.5 472 63.1
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 3.9e-177 625.5 479 61.8
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 3.9e-177 625.5 470 62.8
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 8.7e-177 624.4 482 61.2
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.1e-176 624.0 491 61.9
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.5e-176 623.6 473 62.2
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.9e-176 623.2 471 62.6
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.9e-176 623.2 475 60.8
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 2.5e-176 622.9 471 63.1
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 3.3e-176 622.5 501 59.9
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 5.6e-176 621.7 472 61.4
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 7.3e-176 621.3 483 61.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 9.6e-176 620.9 474 62.7
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 9.6e-176 620.9 485 61.4
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 1.2e-175 620.5 476 62.0
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.6e-175 620.2 463 63.1
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.6e-175 620.2 511 58.1
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 3.6e-175 619.0 477 61.4
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 8.1e-175 617.8 470 63.0
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.8e-174 616.7 475 60.8
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 1.8e-174 616.7 482 62.0
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.8e-174 616.7 474 61.8
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 5.3e-174 615.1 471 62.4
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 6.9e-174 614.8 470 61.9
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.5e-173 613.6 470 63.2
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.5e-173 613.6 475 61.3
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.5e-173 613.6 470 61.1
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.0e-173 613.2 469 62.5
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 3.4e-173 612.5 475 61.5
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 4.4e-173 612.1 477 61.4
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 4.4e-173 612.1 469 62.0
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 4.4e-173 612.1 473 60.7
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.2e-172 609.8 491 59.1
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.9e-172 609.4 454 64.1
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.9e-172 609.4 475 60.6
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 3.8e-172 609.0 475 61.1
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 6.4e-172 608.2 475 60.4
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 6.4e-172 608.2 500 59.0
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 1.1e-171 607.4 476 61.3
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.4e-171 607.1 477 61.0
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 9.3e-171 604.4 531 57.1
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.1e-170 603.2 494 59.7
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.1e-170 603.2 448 64.3
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 7.8e-170 601.3 497 59.4
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 2.3e-169 599.7 491 58.9
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.6e-167 593.6 475 60.0
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.1e-166 590.9 510 57.5
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 1.2e-165 587.4 534 54.9
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 4.5e-165 585.5 447 62.2
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 4.2e-163 578.9 555 53.2
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 9.3e-163 577.8 474 58.2
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.7e-159 565.8 447 60.0
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 5.3e-158 562.0 473 57.7
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 6.9e-158 561.6 500 55.8
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 9.0e-158 561.2 480 57.5
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.2e-157 560.8 428 62.4
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 7.6e-157 558.1 496 56.5
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 4.9e-156 555.4 456 59.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 4.9e-156 555.4 477 58.5
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 2.5e-155 553.1 466 58.2
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 8.2e-151 538.1 473 56.2
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.7e-148 530.4 488 56.4
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.6e-143 513.8 478 55.6
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 2.0e-141 506.9 490 52.9
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 3.4e-141 506.1 496 52.0
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 7.2e-139 498.4 485 52.6
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 5.0e-132 475.7 470 51.9
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 9.7e-128 461.5 390 57.4
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 3.7e-127 459.5 381 59.3
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 2.6e-125 453.4 382 58.6
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 5.9e-125 452.2 385 58.2
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 5.0e-124 449.1 450 53.3
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 8.5e-124 448.4 384 57.8
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.2e-123 446.4 377 58.6
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.4e-121 441.0 473 48.6
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 4.4e-120 436.0 320 64.4
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 5.5e-115 419.1 529 42.9
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 9.4e-115 418.3 357 56.9
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.2e-114 417.9 393 52.9
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 2.5e-107 393.7 386 52.3
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 7.2e-107 392.1 253 70.0
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.3e-103 381.3 288 62.5
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.5e-101 373.2 280 63.6
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.6e-96 357.1 345 53.6
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 3.6e-90 336.7 344 50.3
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.7e-85 320.5 356 48.0
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 9.2e-78 295.4 182 72.0
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 4.2e-62 243.4 556 34.0
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 7.8e-61 239.2 160 68.1
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.9e-44 183.7 93 84.9
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.1e-41 175.6 99 77.8
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 4.6e-29 133.7 129 53.5
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 1.5e-27 128.6 284 33.5
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 1.3e-26 125.6 69 73.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.2e-26 124.8 78 66.7
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.1e-25 120.9 88 61.4
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 3.1e-25 120.9 448 29.0
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 5.5e-22 110.2 100 58.0
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 9.1e-17 92.8 130 40.8
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 1.0e-12 79.3 70 55.7
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 4.5e-08 63.9 54 59.3


User provided reference genes

Program Settings