Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_2530 Physcomitrium patens HOM05D006258 ORTHO05D007961 1.4e-311 1072.8 877 100.0
Pp3c16_4140 Physcomitrium patens HOM05D006258 ORTHO05D007961 2.2e-106 391.3 895 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1493__1494 Anthoceros agrestis HOM05D006258 ORTHO05D007961 7.1e-49 200.3 647 40.6
PSO017G5475 Papaver somniferum HOM05D006258 ORTHO05D007961 1.7e-34 152.5 667 34.9
PSO170G6770 Papaver somniferum HOM05D006258 ORTHO05D007961 3.2e-33 148.3 667 33.7
TAR625G0708 Trochodendron aralioides HOM05D006258 ORTHO05D007961 1.0e-31 143.3 215 35.8
Aa31LG2G19560 Aethionema arabicum HOM05D006258 ORTHO05D007961 6.7e-31 140.6 214 34.1
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 1.5e-30 139.4 208 35.1
AagrBONN_evm.TU.Sc2ySwM_348.3 Anthoceros agrestis HOM05D006258 ORTHO05D007961 1.9e-30 139.0 215 38.6
MSTRG.19663 Avicennia marina HOM05D006258 ORTHO05D007961 1.9e-30 139.0 689 30.3
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 3.3e-30 138.3 731 34.7
Prupe.7G266300 Prunus persica HOM05D006258 ORTHO05D007961 4.3e-30 137.9 208 34.6
BcaNung03436 Brassica carinata HOM05D006258 ORTHO05D007961 5.7e-30 137.5 214 33.6
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 5.7e-30 137.5 730 34.1
CARHR238690 Cardamine hirsuta HOM05D006258 ORTHO05D007961 7.4e-30 137.1 634 32.2
THA.LOC104811334 Tarenaya hassleriana HOM05D006258 ORTHO05D007961 7.4e-30 137.1 215 34.0
Gohir.D08G099500 Gossypium hirsutum HOM05D006258 ORTHO05D007961 1.3e-29 136.3 629 35.6
Os09g0423300 Oryza sativa ssp. japonica HOM05D006258 ORTHO05D007961 1.3e-29 136.3 214 34.1
BraA01t00683Z Brassica rapa HOM05D006258 ORTHO05D007961 1.7e-29 136.0 214 34.1
Gohir.A08G088300 Gossypium hirsutum HOM05D006258 ORTHO05D007961 1.7e-29 136.0 630 35.6
Nn8g40038 Nelumbo nucifera HOM05D006258 ORTHO05D007961 1.7e-29 136.0 634 37.2
Thecc.09G153300 Theobroma cacao HOM05D006258 ORTHO05D007961 1.7e-29 136.0 665 34.6
A01p07350 Brassica napus HOM05D006258 ORTHO05D007961 2.2e-29 135.6 214 34.1
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 3.7e-29 134.8 214 33.6
AagrBONN_evm.TU.Sc2ySwM_142.3 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_143.1 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_348.8 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1519 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1521 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_82.5 Anthoceros agrestis HOM05D006258 ORTHO05D007961 8.2e-29 133.7 114 56.1
QL02p094105 Quercus lobata HOM05D006258 ORTHO05D007961 1.1e-28 133.3 214 33.6
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.4e-28 132.9 727 34.5
SEGI_25615 Sequoiadendron giganteum HOM05D006258 ORTHO05D007961 1.8e-28 132.5 210 33.3
Gorai.004G107200 Gossypium raimondii HOM05D006258 ORTHO05D007961 2.4e-28 132.1 629 35.3
PGR142G1283 Punica granatum HOM05D006258 ORTHO05D007961 2.4e-28 132.1 696 33.8
COL.COLO4_05707 Corchorus olitorius HOM05D006258 ORTHO05D007961 3.1e-28 131.7 214 32.7
BcaC09g51872 Brassica carinata HOM05D006258 ORTHO05D007961 4.1e-28 131.3 214 33.2
Mapoly0036s0017 Marchantia polymorpha HOM05D006258 ORTHO05D007961 4.1e-28 131.3 111 55.0
GSVIVG01014050001 Vitis vinifera HOM05D006258 ORTHO05D007961 5.3e-28 131.0 673 38.2
arahy.Tifrunner.gnm1.ann1.MTM7TL Arachis hypogaea HOM05D006258 ORTHO05D007961 9.1e-28 130.2 209 32.5
arahy.Tifrunner.gnm1.ann1.FEEJ53 Arachis hypogaea HOM05D006258 ORTHO05D007961 1.2e-27 129.8 209 32.5
Dinv42824 Davidia involucrata HOM05D006258 ORTHO05D007961 1.2e-27 129.8 630 36.0
TWI63G1632 Tripterygium wilfordii HOM05D006258 ORTHO05D007961 2.6e-27 128.6 213 33.3
MELO3C010202.2 Cucumis melo HOM05D006258 ORTHO05D007961 3.4e-27 128.3 630 34.8
BolC1t00798H Brassica oleracea HOM05D006258 ORTHO05D007961 4.5e-27 127.9 214 32.7
HanXRQChr03g0066041 Helianthus annuus HOM05D006258 ORTHO05D007961 4.5e-27 127.9 214 32.2
Atru.chr7.3 Acer truncatum HOM05D006258 ORTHO05D007961 7.7e-27 127.1 214 32.2
Ciclev10007430m.g Citrus clementina HOM05D006258 ORTHO05D007961 7.7e-27 127.1 214 31.8
Potri.006G005100 Populus trichocarpa HOM05D006258 ORTHO05D007961 1.3e-26 126.3 629 35.5
Aqoxy7G02393 Aquilegia oxysepala HOM05D006258 ORTHO05D007961 1.7e-26 125.9 644 34.5
CsaV3_1G029170 Cucumis sativus L. HOM05D006258 ORTHO05D007961 1.7e-26 125.9 717 32.6
ATR0739G146 Amborella trichopoda HOM05D006258 ORTHO05D007961 2.9e-26 125.2 214 32.2
C01p08100 Brassica napus HOM05D006258 ORTHO05D007961 2.9e-26 125.2 214 32.2
DCAR_020087 Daucus carota HOM05D006258 ORTHO05D007961 2.9e-26 125.2 208 30.8
Manes.14G112800 Manihot esculenta HOM05D006258 ORTHO05D007961 6.5e-26 124.0 214 32.2
CiPaw.16G107200 Carya illinoinensis HOM05D006258 ORTHO05D007961 8.5e-26 123.6 214 30.8
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 8.5e-26 123.6 214 30.4
SGA_v2.0_scaffold45G17009 Striga asiatica HOM05D006258 ORTHO05D007961 8.5e-26 123.6 208 31.2
VMungo0464G1023 Vigna mungo HOM05D006258 ORTHO05D007961 1.4e-25 122.9 659 28.4
Lj9P721T44 Lonicera japonica HOM05D006258 ORTHO05D007961 2.5e-25 122.1 213 31.0
SalBow1G4688 Salvia bowleyana HOM05D006258 ORTHO05D007961 2.5e-25 122.1 214 33.2
Lalb_Chr06g0172791 Lupinus albus HOM05D006258 ORTHO05D007961 4.2e-25 121.3 209 31.6
HPP92_018549 Vanilla planifolia HOM05D006258 ORTHO05D007961 5.5e-25 120.9 631 39.6
Actinidia20935 Actinidia chinensis HOM05D006258 ORTHO05D007961 9.4e-25 120.2 649 35.4
Dinv43276 Davidia involucrata HOM05D006258 ORTHO05D007961 2.1e-24 119.0 626 35.5
Lsat_1_v5_gn_7_49581 Lactuca sativa HOM05D006258 ORTHO05D007961 2.1e-24 119.0 654 34.3
Sp7g28700 Schrenkiella parvula HOM05D006258 ORTHO05D007961 2.1e-24 119.0 180 33.3
THA.LOC109116244 Tarenaya hassleriana HOM05D006258 ORTHO05D007961 4.7e-24 117.9 181 33.7
Oeu055282.2 Olea europaea HOM05D006258 ORTHO05D007961 6.1e-24 117.5 693 33.9
AL7G21300 Arabidopsis lyrata HOM05D006258 ORTHO05D007961 7.9e-24 117.1 180 32.8
Sed0027468 Sechium edule HOM05D006258 ORTHO05D007961 7.9e-24 117.1 631 33.0
Carub.0007s0974 Capsella rubella HOM05D006258 ORTHO05D007961 1.8e-23 115.9 187 33.2
Haze_19146 Corylus avellana HOM05D006258 ORTHO05D007961 1.8e-23 115.9 213 30.0
CAN.G1610.1 Capsicum annuum HOM05D006258 ORTHO05D007961 6.7e-23 114.0 740 31.2
Thhalv10024344m.g Eutrema salsugineum HOM05D006258 ORTHO05D007961 6.7e-23 114.0 180 31.1
Duzib168G2382 Durio zibethinus HOM05D006258 ORTHO05D007961 1.1e-22 113.2 214 30.4
Migut.J01390 Erythranthe guttata HOM05D006258 ORTHO05D007961 1.1e-22 113.2 634 28.1
MBI15_g27201_MAGBIO Magnolia biondii HOM05D006258 ORTHO05D007961 1.5e-22 112.8 686 33.7
AT4G30825 Arabidopsis thaliana HOM05D006258 ORTHO05D007961 2.0e-22 112.5 180 31.7
Rhsim01G0024600 Rhododendron simsii HOM05D006258 ORTHO05D007961 5.7e-22 110.9 214 28.0
Phvul.004G145400 Phaseolus vulgaris HOM05D006258 ORTHO05D007961 1.3e-21 109.8 214 27.6
Lj6g0013743 Lotus japonicus HOM05D006258 ORTHO05D007961 2.8e-21 108.6 209 29.7
Solyc07g005950.4 Solanum lycopersicum HOM05D006258 ORTHO05D007961 3.7e-21 108.2 732 31.8
Sopen07g002080 Solanum pennellii HOM05D006258 ORTHO05D007961 4.8e-21 107.8 732 31.8
PGSC0003DMG400011207 Solanum tuberosum HOM05D006258 ORTHO05D007961 1.4e-20 106.3 648 32.6
Nitab4.5_0006810g0010 Nicotiana tabacum HOM05D006258 ORTHO05D007961 3.1e-20 105.1 214 29.0
Nitab4.5_0003759g0010 Nicotiana tabacum HOM05D006258 ORTHO05D007961 7.0e-20 104.0 648 32.6
CANSAT11G0498 Cannabis sativa HOM05D006258 ORTHO05D007961 9.1e-20 103.6 634 33.8
Rhsim01G0025000 Rhododendron simsii HOM05D006258 ORTHO05D007961 2.0e-19 102.4 212 27.8
TPR.G15324 Trifolium pratense HOM05D006258 ORTHO05D007961 4.5e-19 101.3 211 28.9
Eucgr.C00243 Eucalyptus grandis HOM05D006258 ORTHO05D007961 5.9e-19 100.9 185 32.4
CDE02G4246 Ceratophyllum demersum HOM05D006258 ORTHO05D007961 1.3e-18 99.8 216 28.2
Medtr2g058580 Medicago truncatula HOM05D006258 ORTHO05D007961 2.9e-18 98.6 211 28.0
Zm00001eb414570 Zea mays HOM05D006258 ORTHO05D007961 6.5e-18 97.4 200 28.5
Peaxi162Scf01313g10029 Petunia axillaris HOM05D006258 ORTHO05D007961 1.4e-17 96.3 284 26.1
Ca_02705_v3 Cicer arietinum L. HOM05D006258 ORTHO05D007961 3.2e-17 95.1 212 27.8
Cpa.g.sc199.25 Carica papaya HOM05D006258 ORTHO05D007961 4.2e-17 94.7 185 31.4
AUR62025364 Chenopodium quinoa HOM05D006258 ORTHO05D007961 1.2e-16 93.2 178 32.6
EL10Ac8g18915 Beta vulgaris HOM05D006258 ORTHO05D007961 2.1e-16 92.4 178 30.3
AUR62028365 Chenopodium quinoa HOM05D006258 ORTHO05D007961 2.1e-16 92.4 178 32.6
CSS0048528 Camellia sinensis var. sinensis HOM05D006258 ORTHO05D007961 3.6e-16 91.7 215 27.0
Ah.09g228710 Amaranthus hybridus HOM05D006258 ORTHO05D007961 6.1e-16 90.9 287 26.8
RcHm_v2.0_Chr2g0085211 Rosa chinensis HOM05D006258 ORTHO05D007961 6.1e-16 90.9 192 32.3
Sabra06G0004300 Salix brachista HOM05D006258 ORTHO05D007961 6.1e-16 90.9 186 30.1
Sc08g0004870 Simmondsia chinensis HOM05D006258 ORTHO05D007961 8.0e-16 90.5 185 28.1
THA.LOC104814742 Tarenaya hassleriana HOM05D006258 ORTHO05D007961 1.8e-15 89.4 185 29.7
AagrBONN_evm.TU.Sc2ySwM_301.2 Anthoceros agrestis HOM05D006258 ORTHO05D007961 5.7e-14 84.3 74 54.1
AagrBONN_evm.TU.Sc2ySwM_348.6 Anthoceros agrestis HOM05D006258 ORTHO05D007961 5.7e-14 84.3 74 54.1
Psat2g031800 Pisum sativum HOM05D006258 ORTHO05D007961 7.4e-14 84.0 210 25.2
Glyma.04G155800 Glycine max HOM05D006258 ORTHO05D007961 1.7e-13 82.8 189 29.6
TAR625G1263 Trochodendron aralioides HOM05D006258 ORTHO05D007961 1.7e-13 82.8 261 27.6
Nitab4.5_0006335g0030 Nicotiana tabacum HOM05D006258 ORTHO05D007961 1.1e-12 80.1 189 24.9
Sc08g0004880 Simmondsia chinensis HOM05D006258 ORTHO05D007961 1.4e-12 79.7 107 37.4
VMungo0720G1484 Vigna mungo HOM05D002479 ORTHO05D002675 9.1e-12 77.0 169 34.3
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 3.8e-10 71.6 157 31.8
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 3.8e-10 71.6 157 31.8
AagrBONN_evm.TU.Sc2ySwM_348.7 Anthoceros agrestis HOM05D006258 ORTHO05D007961 6.5e-10 70.9 66 54.5
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.5e-09 69.7 150 30.0
TWI09G1194 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.5e-09 69.7 135 31.9
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.9e-09 69.3 161 29.8
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.9e-09 69.3 148 30.4
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.5e-09 68.9 161 29.8
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.5e-09 68.9 150 30.0
Phvul.006G222000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 2.5e-09 68.9 169 32.0
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.2e-09 68.6 150 30.0
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 3.2e-09 68.6 133 31.6
RcHm_v2.0_Chr4g0388991 Rosa chinensis HOM05D002479 ORTHO05D002675 4.2e-09 68.2 137 31.4
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.5e-09 67.8 140 32.1
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.5e-09 67.8 140 32.1
Glyma.10G001500 Glycine max HOM05D002479 ORTHO05D002675 9.4e-09 67.0 147 32.0
CBR_g22948 Chara braunii HOM05D002479 ORTHO05D002675 1.2e-08 66.6 222 24.3
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.2e-08 66.6 137 31.4
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 1.6e-08 66.2 179 29.6
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.1e-08 65.9 140 32.1
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 3.6e-08 65.1 148 31.8
Lalb_Chr01g0020831 Lupinus albus HOM05D002479 ORTHO05D002675 6.1e-08 64.3 140 32.1
Manes.15G035300 Manihot esculenta HOM05D002479 ORTHO05D002675 6.1e-08 64.3 153 28.8
Phvul.007G135000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 6.1e-08 64.3 153 30.7
RcHm_v2.0_Chr4g0389171 Rosa chinensis HOM05D002479 ORTHO05D002675 6.1e-08 64.3 129 31.8
MD13G1203500 Malus domestica HOM05D002479 ORTHO05D002675 8.0e-08 63.9 154 28.6
Potri.010G078900 Populus trichocarpa HOM05D002479 ORTHO05D002675 8.0e-08 63.9 156 29.5
Sabra10G0064300 Salix brachista HOM05D002479 ORTHO05D002675 8.0e-08 63.9 133 32.3
arahy.Tifrunner.gnm1.ann1.4S02NL Arachis hypogaea HOM05D000001 ORTHO05D009083 1.0e-07 63.5 154 30.5
arahy.Tifrunner.gnm1.ann1.SV1H5N Arachis hypogaea HOM05D002479 ORTHO05D002675 1.0e-07 63.5 154 30.5
MSTRG.24708 Avicennia marina HOM05D002479 ORTHO05D002675 1.0e-07 63.5 141 29.1
Ciclev10004292m.g Citrus clementina HOM05D002479 ORTHO05D002675 1.4e-07 63.2 154 28.6
Pp3c15_12010 Physcomitrium patens HOM05D002244 ORTHO05D002269 1.4e-07 63.2 183 25.1
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 1.8e-07 62.8 153 28.8
SGA_v2.0_scaffold79G25620 Striga asiatica HOM05D002479 ORTHO05D002675 2.3e-07 62.4 140 30.0
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 3.0e-07 62.0 154 29.9
VMungo0720G1235 Vigna mungo HOM05D002479 ORTHO05D002675 3.0e-07 62.0 153 29.4
Lj5C66G14 Lonicera japonica HOM05D000001 ORTHO05D009667 4.0e-07 61.6 180 26.1
Psat6g170520 Pisum sativum HOM05D002479 ORTHO05D002675 4.0e-07 61.6 154 29.9
Peaxi162Scf00515g00029 Petunia axillaris HOM05D000891 ORTHO05D000761 8.8e-07 60.5 110 30.9
TPR.G27052 Trifolium pratense HOM05D006258 ORTHO05D007961 8.8e-07 60.5 61 41.0
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 1.2e-06 60.1 131 30.5
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 1.2e-06 60.1 153 28.8
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 1.5e-06 59.7 153 29.4
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 1.5e-06 59.7 153 29.4
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 1.5e-06 59.7 153 29.4
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 1.5e-06 59.7 153 29.4
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 1.5e-06 59.7 153 29.4
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 2.0e-06 59.3 153 29.4
Dinv05730 Davidia involucrata HOM05D002479 ORTHO05D002675 2.0e-06 59.3 112 34.8
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 2.0e-06 59.3 131 29.8
HPP92_024602 Vanilla planifolia HOM05D000001 ORTHO05D009667 2.0e-06 59.3 184 23.9
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 2.6e-06 58.9 141 30.5
Ca_10409_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 2.6e-06 58.9 142 30.3
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 4.4e-06 58.2 146 25.3
TWI60G1708 Tripterygium wilfordii HOM05D002244 ORTHO05D002269 4.4e-06 58.2 113 30.1
Cfa008402 Carpinus fangiana HOM05D002479 ORTHO05D002675 5.7e-06 57.8 121 32.2
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 7.5e-06 57.4 94 37.2
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 7.5e-06 57.4 94 37.2
RcHm_v2.0_Chr2g0137061 Rosa chinensis HOM05D000001 ORTHO05D009667 7.5e-06 57.4 177 24.9
AagrBONN_evm.TU.Sc2ySwM_228.2543 Anthoceros agrestis HOM05D002244 ORTHO05D002269 9.7e-06 57.0 105 33.3
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 9.7e-06 57.0 107 29.0


User provided reference genes

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