Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 0.0e+00 1078.5 532 100.0
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.2e-105 387.1 550 44.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.5e-79 300.1 524 37.2
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.7e-78 297.7 523 37.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.3e-77 293.5 522 38.3
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.6e-76 291.2 516 37.6
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.6e-76 291.2 513 38.2
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.0e-75 288.5 511 38.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.4e-75 288.1 521 37.2
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.4e-75 288.1 520 36.0
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.0e-75 287.0 517 35.8
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 4.0e-75 286.6 514 36.6
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 4.4e-74 283.1 519 36.8
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 9.8e-74 282.0 509 39.9
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.7e-73 281.2 509 36.9
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 3.7e-73 280.0 519 35.5
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.9e-73 279.6 513 37.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 8.3e-73 278.9 515 37.3
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.8e-72 277.7 549 35.2
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.4e-72 277.3 512 37.1
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.4e-72 277.3 515 36.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.2e-72 276.9 525 35.2
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.2e-71 275.0 520 36.2
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.6e-71 274.6 513 35.9
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.6e-71 274.6 518 35.3
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.0e-71 274.2 523 35.0
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.0e-71 274.2 513 36.5
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.0e-71 274.2 513 36.1
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.7e-71 273.9 517 35.6
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.5e-71 273.5 515 34.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.5e-71 273.5 515 34.8
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-71 273.5 515 35.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 7.8e-71 272.3 519 35.1
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 2.3e-70 270.8 516 35.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.3e-70 270.8 523 34.6
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.0e-70 270.4 517 35.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 3.0e-70 270.4 524 35.9
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 3.9e-70 270.0 518 35.3
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 6.6e-70 269.2 517 34.4
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.1e-69 268.5 512 35.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 2.5e-69 267.3 453 38.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.3e-69 266.9 514 35.0
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 5.6e-69 266.2 517 34.4
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-68 264.6 516 36.4
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.6e-68 264.6 482 36.9
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.1e-68 264.2 525 34.9
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.1e-68 264.2 505 34.1
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.1e-68 264.2 516 34.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.8e-68 263.8 463 37.8
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 4.7e-68 263.1 463 38.9
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 4.7e-68 263.1 508 36.0
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 8.0e-68 262.3 516 34.7
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.4e-67 261.5 517 34.6
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.4e-67 261.5 502 36.7
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.1e-67 260.4 515 34.0
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-67 260.4 515 35.5
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 3.1e-67 260.4 514 36.0
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 5.2e-67 259.6 522 34.9
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 8.9e-67 258.8 517 34.8
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 8.9e-67 258.8 517 35.0
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.2e-66 258.5 455 38.2
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.2e-66 258.5 528 33.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 2.6e-66 257.3 481 35.1
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 3.4e-66 256.9 515 35.1
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.4e-66 256.9 461 37.3
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.4e-66 256.5 514 36.8
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 5.8e-66 256.1 514 34.4
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 7.5e-66 255.8 521 34.7
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 9.8e-66 255.4 516 35.3
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.3e-65 255.0 520 32.9
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.9e-65 253.8 520 33.3
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.9e-65 253.8 515 34.0
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 3.7e-65 253.4 518 35.5
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.9e-64 251.1 481 35.8
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.2e-64 250.4 515 34.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 4.1e-64 250.0 452 37.8
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 9.2e-64 248.8 514 34.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.6e-63 248.1 534 34.1
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 8.6e-62 242.3 511 35.4
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.9e-61 241.1 474 34.4
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.5e-61 240.7 490 35.5
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.5e-61 240.7 523 34.2
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 4.3e-61 240.0 476 35.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.6e-60 236.9 456 36.4
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.7e-60 236.5 515 34.6
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.2e-60 236.1 525 34.1
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 3.2e-56 223.8 479 34.4
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 3.5e-55 220.3 478 32.6
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 5.6e-53 213.0 471 32.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.6e-52 211.5 516 32.6
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 3.6e-52 210.3 425 36.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.1e-52 209.1 458 32.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.9e-49 199.9 820 26.0
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 5.4e-48 196.4 419 34.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-46 191.4 413 33.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.7e-46 191.4 512 29.7
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.5e-45 188.3 537 30.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.9e-45 188.0 472 32.2
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 4.7e-44 183.3 515 30.1
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.4e-43 181.8 436 31.7
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.8e-43 181.4 515 29.7
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.8e-43 181.4 303 38.9
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.3e-41 175.3 375 34.9
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 4.9e-41 173.3 262 39.7
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 5.4e-40 169.9 262 39.7
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.2e-39 168.7 274 38.0
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 4.6e-39 166.8 446 30.3
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-38 164.9 305 37.0
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 6.6e-38 162.9 412 31.8
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.8e-36 157.5 261 37.5
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 1.9e-32 144.8 159 50.3
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.4e-32 144.4 203 42.9
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 5.4e-32 143.3 262 37.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 9.3e-32 142.5 228 39.9
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-31 140.6 206 41.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.5e-31 140.6 473 30.0
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.8e-30 138.3 163 46.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.3e-30 137.9 280 33.2
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.1e-29 135.6 193 42.5
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.3e-25 122.1 207 39.6
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 5.5e-24 116.7 278 30.9
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.2e-23 115.5 496 26.2
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 4.6e-23 113.6 113 53.1
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.7e-20 104.0 82 62.2
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 6.2e-20 103.2 323 31.0
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-19 102.1 324 28.7
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 3.4e-18 97.4 81 60.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.8e-17 94.0 84 56.0
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 3.8e-17 94.0 179 38.5
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.5e-17 93.2 122 45.1
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 7.1e-16 89.7 318 28.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.1e-15 88.2 285 30.2
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 7.9e-15 86.3 310 27.7
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.3e-14 85.5 62 67.7
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 8.7e-14 82.8 128 36.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.6e-12 78.6 154 35.7
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.9e-10 70.1 79 44.3
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.6e-07 60.8 175 28.0


User provided reference genes

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