Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_3880 Physcomitrium patens HOM05D003526 ORTHO05D004123 7.0e-66 254.2 169 100.0
Pp3c13_8060 Physcomitrium patens HOM05D003526 ORTHO05D004123 3.4e-36 155.6 136 88.2
SMO169G0060 Selaginella moellendorffii HOM05D003526 ORTHO05D004123 4.9e-27 125.2 137 71.5
PSO063G2352 Papaver somniferum HOM05D003526 ORTHO05D004123 3.2e-26 122.5 137 74.5
Mapoly0013s0110 Marchantia polymorpha HOM05D003526 ORTHO05D004123 4.1e-26 122.1 136 76.5
AagrBONN_evm.TU.Sc2ySwM_368.1035 Anthoceros agrestis HOM05D003526 ORTHO05D004123 5.4e-26 121.7 136 76.5
PSO421G0535 Papaver somniferum HOM05D003526 ORTHO05D004123 7.0e-26 121.3 137 73.7
THA.LOC104815322 Tarenaya hassleriana HOM05D003526 ORTHO05D004123 7.0e-26 121.3 136 60.3
Psat1g133000 Pisum sativum HOM05D003526 ORTHO05D004123 1.2e-25 120.6 136 75.7
arahy.Tifrunner.gnm1.ann1.C7EUSB Arachis hypogaea HOM05D003526 ORTHO05D004123 6.0e-25 118.2 136 70.6
arahy.Tifrunner.gnm1.ann1.RY2Z4G Arachis hypogaea HOM05D003526 ORTHO05D004123 6.0e-25 118.2 136 70.6
CDE02G2200 Ceratophyllum demersum HOM05D003526 ORTHO05D004123 2.5e-23 112.8 136 72.8
CDE09G0837 Ceratophyllum demersum HOM05D003526 ORTHO05D004123 2.5e-23 112.8 136 72.8
Dinv42370 Davidia involucrata HOM05D003526 ORTHO05D004123 1.2e-22 110.5 136 69.1
unitig_26.g9178 Utricularia gibba HOM05D003526 ORTHO05D004123 4.7e-22 108.6 136 67.6
Eucgr.J02828 Eucalyptus grandis HOM05D003526 ORTHO05D004123 6.2e-22 108.2 136 72.8
Hund08715 Selenicereus undatus HOM05D003526 ORTHO05D004123 6.2e-22 108.2 136 71.3
Glyma.17G051000 Glycine max HOM05D003526 ORTHO05D004123 8.0e-22 107.8 136 63.2
Phvul.003G132700 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 1.1e-21 107.5 136 66.9
Medtr2g041190 Medicago truncatula HOM05D003526 ORTHO05D004123 1.8e-21 106.7 136 72.1
Lj6g0015271 Lotus japonicus HOM05D003526 ORTHO05D004123 2.3e-21 106.3 136 72.8
Oeu049520.1 Olea europaea HOM05D003526 ORTHO05D004123 3.1e-21 105.9 136 66.2
TPR.G31545 Trifolium pratense HOM05D003526 ORTHO05D004123 3.1e-21 105.9 136 73.5
Gohir.A07G013800 Gossypium hirsutum HOM05D003526 ORTHO05D004123 6.8e-21 104.8 136 69.1
Gohir.D07G013600 Gossypium hirsutum HOM05D003526 ORTHO05D004123 6.8e-21 104.8 136 69.1
Gorai.001G014300 Gossypium raimondii HOM05D003526 ORTHO05D004123 6.8e-21 104.8 136 69.1
VMungo0331G1243 Vigna mungo HOM05D003526 ORTHO05D004123 6.8e-21 104.8 136 65.4
QL05p008227 Quercus lobata HOM05D003526 ORTHO05D004123 8.9e-21 104.4 136 61.0
Lj4A909T82 Lonicera japonica HOM05D003526 ORTHO05D004123 1.2e-20 104.0 137 70.8
Lju5057A0G54 Lonicera japonica HOM05D003526 ORTHO05D004123 1.2e-20 104.0 137 70.8
Migut.J00951 Erythranthe guttata HOM05D003526 ORTHO05D004123 1.5e-20 103.6 136 73.5
CBR_g31704 Chara braunii HOM05D003526 ORTHO05D004123 2.0e-20 103.2 139 48.9
FAN23G1326 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.0e-20 103.2 136 70.6
FAN28G1609 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.0e-20 103.2 136 70.6
vmacro17176 Vaccinium macrocarpon HOM05D003526 ORTHO05D004123 2.0e-20 103.2 136 72.8
ECA234G2483 Erigeron canadensis HOM05D003526 ORTHO05D004123 2.6e-20 102.8 136 70.6
FvH4_1g08240 Fragaria vesca HOM05D003526 ORTHO05D004123 2.6e-20 102.8 136 70.6
FAN19G0472 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.6e-20 102.8 136 70.6
FAN26G1346 Fragaria x ananassa HOM05D003526 ORTHO05D004123 2.6e-20 102.8 136 70.6
RcHm_v2.0_Chr2g0094291 Rosa chinensis HOM05D003526 ORTHO05D004123 2.6e-20 102.8 136 69.9
Lalb_Chr07g0181061 Lupinus albus HOM05D003526 ORTHO05D004123 3.4e-20 102.4 136 69.1
FAN26G0984 Fragaria x ananassa HOM05D003526 ORTHO05D004123 4.4e-20 102.1 136 69.9
Gorai.010G086700 Gossypium raimondii HOM05D003526 ORTHO05D004123 4.4e-20 102.1 136 64.7
Aqoxy2G04049 Aquilegia oxysepala HOM05D003526 ORTHO05D004123 7.5e-20 101.3 136 63.2
MD15G1213900 Malus domestica HOM05D003526 ORTHO05D004123 9.8e-20 100.9 136 71.3
SEGI_29805 Sequoiadendron giganteum HOM05D003526 ORTHO05D004123 1.3e-19 100.5 136 71.3
Solyc12g009060.2 Solanum lycopersicum HOM05D003526 ORTHO05D004123 2.9e-19 99.4 136 70.6
Sopen12g003990 Solanum pennellii HOM05D003526 ORTHO05D004123 2.9e-19 99.4 136 70.6
PGSC0003DMG400000328 Solanum tuberosum HOM05D003526 ORTHO05D004123 2.9e-19 99.4 136 70.6
Os07g0236800 Oryza sativa ssp. japonica HOM05D003526 ORTHO05D004123 3.7e-19 99.0 137 65.0
CAN.G1963.11 Capsicum annuum HOM05D003526 ORTHO05D004123 4.9e-19 98.6 136 70.6
EL10Ac8g19129 Beta vulgaris HOM05D003526 ORTHO05D004123 6.4e-19 98.2 136 70.6
CiPaw.01G220500 Carya illinoinensis HOM05D003526 ORTHO05D004123 6.4e-19 98.2 136 61.8
Phvul.010G132400 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 6.4e-19 98.2 136 68.4
Lj3g0009274 Lotus japonicus HOM05D003526 ORTHO05D004123 1.4e-18 97.1 136 69.9
Zm00001eb303830 Zea mays HOM05D003526 ORTHO05D004123 1.4e-18 97.1 136 68.4
TPR.G7396 Trifolium pratense HOM05D003526 ORTHO05D004123 1.9e-18 96.7 130 72.3
Ca_26620_v3 Cicer arietinum L. HOM05D003526 ORTHO05D004123 3.2e-18 95.9 136 69.9
Rhsim05G0012600 Rhododendron simsii HOM05D003526 ORTHO05D004123 3.2e-18 95.9 136 69.1
unitig_749.g14236 Utricularia gibba HOM05D003526 ORTHO05D004123 3.2e-18 95.9 136 69.9
ECA236G0053 Erigeron canadensis HOM05D003526 ORTHO05D004123 4.1e-18 95.5 136 69.1
Thhalv10002656m.g Eutrema salsugineum HOM05D003526 ORTHO05D004123 4.1e-18 95.5 136 69.9
Oeu002851.2 Olea europaea HOM05D003526 ORTHO05D004123 5.4e-18 95.1 136 69.9
HPP92_012587 Vanilla planifolia HOM05D003526 ORTHO05D004123 5.4e-18 95.1 136 61.0
Potri.018G065100 Populus trichocarpa HOM05D003526 ORTHO05D004123 9.2e-18 94.4 136 68.4
BcaB08g34512 Brassica carinata HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
BcaC01g03144 Brassica carinata HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
A03p44770 Brassica napus HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
C03p55620 Brassica napus HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
BolC3t17839H Brassica oleracea HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
BraA03t13612Z Brassica rapa HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
CSS0009903 Camellia sinensis var. sinensis HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
MD02G1086700 Malus domestica HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.1
Sp3g24760 Schrenkiella parvula HOM05D003526 ORTHO05D004123 1.2e-17 94.0 136 69.9
Aa31LG8G11760 Aethionema arabicum HOM05D003526 ORTHO05D004123 1.6e-17 93.6 136 69.1
Cc06_g11900 Coffea canephora HOM05D003526 ORTHO05D004123 1.6e-17 93.6 136 68.4
Sc18g0002400 Simmondsia chinensis HOM05D003526 ORTHO05D004123 1.6e-17 93.6 136 67.6
Zm00001eb094970 Zea mays HOM05D003526 ORTHO05D004123 1.6e-17 93.6 136 66.9
Carub.0003s2729 Capsella rubella HOM05D003526 ORTHO05D004123 2.7e-17 92.8 136 69.1
CiPaw.03G210000 Carya illinoinensis HOM05D003526 ORTHO05D004123 2.7e-17 92.8 136 69.1
Oeu000304.1 Olea europaea HOM05D003526 ORTHO05D004123 3.5e-17 92.4 136 68.4
PRCOL_00001326 Prasinoderma coloniale HOM05D003526 ORTHO05D004123 4.6e-17 92.0 137 54.7
Hma1.2p1_0797F.1_g219420 Hydrangea macrophylla HOM05D003526 ORTHO05D004123 6.0e-17 91.7 136 68.4
Phvul.009G229000 Phaseolus vulgaris HOM05D003526 ORTHO05D004123 6.0e-17 91.7 136 68.4
Prupe.7G203100 Prunus persica HOM05D003526 ORTHO05D004123 6.0e-17 91.7 136 68.4
AL3G43820 Arabidopsis lyrata HOM05D003526 ORTHO05D004123 7.8e-17 91.3 136 68.4
AT2G06530 Arabidopsis thaliana HOM05D003526 ORTHO05D004123 7.8e-17 91.3 136 68.4
Glyma.15G173500 Glycine max HOM05D003526 ORTHO05D004123 7.8e-17 91.3 136 68.4
CARHR103860 Cardamine hirsuta HOM05D003526 ORTHO05D004123 1.0e-16 90.9 136 68.4
Glyma.09G068000 Glycine max HOM05D003526 ORTHO05D004123 1.0e-16 90.9 136 67.6
Medtr8g019700 Medicago truncatula HOM05D003526 ORTHO05D004123 1.7e-16 90.1 136 68.4
Peaxi162Scf00498g00721 Petunia axillaris HOM05D003526 ORTHO05D004123 1.7e-16 90.1 136 67.6
VMungo1309G0527 Vigna mungo HOM05D003526 ORTHO05D004123 1.7e-16 90.1 136 66.9
arahy.Tifrunner.gnm1.ann1.UL7UL4 Arachis hypogaea HOM05D003526 ORTHO05D004123 2.3e-16 89.7 136 67.6
VMungo1215G2335 Vigna mungo HOM05D003526 ORTHO05D004123 2.3e-16 89.7 128 58.6
vmacro06320 Vaccinium macrocarpon HOM05D003526 ORTHO05D004123 3.9e-16 89.0 136 66.9
arahy.Tifrunner.gnm1.ann1.G5MRUB Arachis hypogaea HOM05D003526 ORTHO05D004123 5.1e-16 88.6 136 66.9
Os11g0703400 Oryza sativa ssp. japonica HOM05D003526 ORTHO05D004123 5.1e-16 88.6 136 58.1
CSS0039396 Camellia sinensis var. sinensis HOM05D003526 ORTHO05D004123 8.6e-16 87.8 136 68.4
Atru.chr7.1664 Acer truncatum HOM05D003526 ORTHO05D004123 1.5e-15 87.0 136 66.2
CANSAT56G1275 Cannabis sativa HOM05D003526 ORTHO05D004123 1.9e-15 86.7 136 66.2
Ca_05010_v3 Cicer arietinum L. HOM05D003526 ORTHO05D004123 2.5e-15 86.3 136 66.2
Aqoxy7G02082 Aquilegia oxysepala HOM05D003526 ORTHO05D004123 4.3e-15 85.5 136 64.7
Cpa.g.sc25.103 Carica papaya HOM05D003526 ORTHO05D004123 4.3e-15 85.5 136 64.7
MSTRG.19476 Avicennia marina HOM05D003526 ORTHO05D004123 5.6e-15 85.1 136 66.2
Dinv25580 Davidia involucrata HOM05D003526 ORTHO05D004123 5.6e-15 85.1 136 65.4
Ciclev10009411m.g Citrus clementina HOM05D003526 ORTHO05D004123 7.3e-15 84.7 136 65.4
Cre04.g213450 Chlamydomonas reinhardtii HOM05D003526 ORTHO05D004123 1.2e-14 84.0 135 61.5
Sabra01G0140900 Salix brachista HOM05D003526 ORTHO05D004123 1.2e-14 84.0 136 64.0
Sabra18G0057700 Salix brachista HOM05D003526 ORTHO05D004123 1.6e-14 83.6 136 64.7
Sed0017134 Sechium edule HOM05D003526 ORTHO05D004123 1.6e-14 83.6 136 66.2
Nn6g35591 Nelumbo nucifera HOM05D003526 ORTHO05D004123 2.1e-14 83.2 136 64.7
Zm00001eb164660 Zea mays HOM05D003526 ORTHO05D004123 2.1e-14 83.2 136 61.8
CiPaw.04G145800 Carya illinoinensis HOM05D003526 ORTHO05D004123 2.8e-14 82.8 136 65.4
PGR044G2259 Punica granatum HOM05D003526 ORTHO05D004123 2.8e-14 82.8 136 65.4
Duzib187G1578 Durio zibethinus HOM05D003526 ORTHO05D004123 3.6e-14 82.4 136 64.7
Sed0007451 Sechium edule HOM05D003526 ORTHO05D004123 4.7e-14 82.0 136 66.9
SGA_v2.0_scaffold97G29148 Striga asiatica HOM05D003526 ORTHO05D004123 4.7e-14 82.0 136 65.4
TAR626G1068 Trochodendron aralioides HOM05D003526 ORTHO05D004123 4.7e-14 82.0 129 65.9
COL.COLO4_18133 Corchorus olitorius HOM05D003526 ORTHO05D004123 6.2e-14 81.6 136 64.7
Eucgr.C00837 Eucalyptus grandis HOM05D003526 ORTHO05D004123 8.1e-14 81.3 136 64.7
Actinidia38465 Actinidia chinensis HOM05D003526 ORTHO05D004123 1.1e-13 80.9 136 64.7
Lalb_Chr08g0232491 Lupinus albus HOM05D003526 ORTHO05D004123 1.1e-13 80.9 136 64.0
MBI09_g03018_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 1.1e-13 80.9 136 65.4
MBI14_g25102_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 1.1e-13 80.9 136 65.4
Potri.001G170400 Populus trichocarpa HOM05D003526 ORTHO05D004123 1.1e-13 80.9 136 62.5
MELO3C015505.2 Cucumis melo HOM05D003526 ORTHO05D004123 1.4e-13 80.5 136 64.7
CsaV3_1G040780 Cucumis sativus L. HOM05D003526 ORTHO05D004123 1.4e-13 80.5 136 64.7
Duzib168G1450 Durio zibethinus HOM05D003526 ORTHO05D004123 2.3e-13 79.7 136 64.0
SalBow6G5462 Salvia bowleyana HOM05D003526 ORTHO05D004123 2.3e-13 79.7 136 64.0
TAR383G0894 Trochodendron aralioides HOM05D003526 ORTHO05D004123 2.3e-13 79.7 136 64.0
ClCG09G000920 Citrullus lanatus HOM05D003526 ORTHO05D004123 3.1e-13 79.3 136 62.5
HanXRQChr04g0126031 Helianthus annuus HOM05D003526 ORTHO05D004123 5.2e-13 78.6 136 64.0
THA.LOC104808898 Tarenaya hassleriana HOM05D003526 ORTHO05D004123 5.2e-13 78.6 136 63.2
ClCG03G015260 Citrullus lanatus HOM05D003526 ORTHO05D004123 6.8e-13 78.2 136 64.0
Rhsim03G0230000 Rhododendron simsii HOM05D003526 ORTHO05D004123 6.8e-13 78.2 136 65.4
HanXRQChr12g0354141 Helianthus annuus HOM05D003526 ORTHO05D004123 8.9e-13 77.8 136 63.2
ATR0559G333 Amborella trichopoda HOM05D003526 ORTHO05D004123 1.2e-12 77.4 136 64.0
AUR62028995 Chenopodium quinoa HOM05D003526 ORTHO05D004123 2.0e-12 76.6 136 63.2
QL02p061059 Quercus lobata HOM05D003526 ORTHO05D004123 2.0e-12 76.6 136 63.2
Hma1.2p1_0169F.1_g074740 Hydrangea macrophylla HOM05D003526 ORTHO05D004123 2.6e-12 76.3 136 63.2
Cfa003030 Carpinus fangiana HOM05D003526 ORTHO05D004123 3.4e-12 75.9 136 63.2
Manes.16G097600 Manihot esculenta HOM05D003526 ORTHO05D004123 4.4e-12 75.5 136 62.5
Nn7g37726 Nelumbo nucifera HOM05D003526 ORTHO05D004123 4.4e-12 75.5 87 78.2
Lsat_1_v5_gn_5_141861 Lactuca sativa HOM05D003526 ORTHO05D004123 7.5e-12 74.7 136 62.5
Haze_25970 Corylus avellana HOM05D003526 ORTHO05D004123 9.9e-12 74.3 136 62.5
TWI63G0377 Tripterygium wilfordii HOM05D003526 ORTHO05D004123 9.9e-12 74.3 136 62.5
Ah.09g231310 Amaranthus hybridus HOM05D003526 ORTHO05D004123 1.3e-11 73.9 136 62.5
Ah.14g085070 Amaranthus hybridus HOM05D003526 ORTHO05D004123 1.7e-11 73.6 136 61.8
MCO01G752 Micromonas commoda HOM05D003526 ORTHO05D004123 1.7e-11 73.6 140 39.3
TWI34G1673 Tripterygium wilfordii HOM05D003526 ORTHO05D004123 1.7e-11 73.6 136 61.8
Actinidia35353 Actinidia chinensis HOM05D003526 ORTHO05D004123 2.2e-11 73.2 136 64.0
DCAR_011953 Daucus carota HOM05D003526 ORTHO05D004123 2.2e-11 73.2 136 62.5
Gohir.A06G075400 Gossypium hirsutum HOM05D003526 ORTHO05D004123 2.9e-11 72.8 136 62.5
MBI05_g06550_MAGBIO Magnolia biondii HOM05D003526 ORTHO05D004123 1.1e-10 70.9 128 38.3
SGA_v2.0_scaffold91G28078 Striga asiatica HOM05D003526 ORTHO05D004123 1.1e-10 70.9 133 63.2
Psat4g183200 Pisum sativum HOM05D003526 ORTHO05D004123 1.4e-10 70.5 136 61.0
Thecc.09G081000 Theobroma cacao HOM05D003526 ORTHO05D004123 1.4e-10 70.5 136 61.0
Gohir.D06G074300 Gossypium hirsutum HOM05D003526 ORTHO05D004123 3.2e-10 69.3 39 87.2
Manes.03G038100 Manihot esculenta HOM05D003526 ORTHO05D004123 3.2e-10 69.3 136 60.3
DCAR_024729 Daucus carota HOM05D003526 ORTHO05D004123 5.4e-10 68.6 137 61.3
Manes.04G143300 Manihot esculenta HOM05D003526 ORTHO05D004123 7.1e-10 68.2 136 58.8
CsaV3_7G034540 Cucumis sativus L. HOM05D003526 ORTHO05D004123 4.6e-09 65.5 136 58.8
EL10Ac2g02708 Beta vulgaris HOM05D003526 ORTHO05D004123 6.0e-09 65.1 66 57.6
Sed0004921 Sechium edule HOM05D003526 ORTHO05D004123 2.3e-08 63.2 136 58.1
GSVIVG01015115001 Vitis vinifera HOM05D003526 ORTHO05D004123 5.1e-08 62.0 136 58.1
Glyma.13G108400 Glycine max HOM05D003526 ORTHO05D004123 6.6e-08 61.6 138 47.1
Actinidia39679 Actinidia chinensis HOM05D003526 ORTHO05D004123 1.1e-07 60.8 66 56.1
SEGI_27634 Sequoiadendron giganteum HOM05D003526 ORTHO05D004123 1.1e-07 60.8 136 58.8
AUR62025178 Chenopodium quinoa HOM05D003526 ORTHO05D004123 2.5e-07 59.7 62 56.5
Haze_26631 Corylus avellana HOM05D003526 ORTHO05D004123 3.3e-07 59.3 137 43.1
MELO3C024361.2 Cucumis melo HOM05D003526 ORTHO05D004123 3.3e-07 59.3 136 56.6
PGR102G0404 Punica granatum HOM05D003526 ORTHO05D004123 5.6e-07 58.5 61 55.7
CANSAT56G1600 Cannabis sativa HOM05D003526 ORTHO05D004123 3.6e-06 55.8 50 54.0
CANSAT56G2739 Cannabis sativa HOM05D003526 ORTHO05D004123 3.6e-06 55.8 50 54.0


User provided reference genes

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