Gene: AT2G06530
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G06530
- Transcript Identifier AT2G06530.1
- Gene Type Coding gene
- Location Chr2 : 2588740-2590285 : negative
Gene Family Information
- ID HOM05D003526
- #Genes/#Species 193/99
- Phylogenetic origin
- ID ORTHO05D004123
- #Genes/#Species 190/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G06530.1
- symbol VPS2.1
- uniprot Q9SKI2
Descriptions
- Description SNF7 family protein
- Computational description VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007034 | IEA | Gene Ontology | vacuolar transport | |
| GO:0007034 | IEA | InterPro | vacuolar transport | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0015031 | IMP IBA | Gene Ontology | protein transport | 1 2 |
| GO:0045324 | IBA | Gene Ontology | late endosome to vacuole transport | 1 |
| GO:0032509 | IBA | Gene Ontology | endosome transport via multivesicular body sorting pathway | 1 |
| GO:0070676 | IDA | Gene Ontology | intralumenal vesicle formation | 3 |
| GO:0016192 | ISS | Gene Ontology | vesicle-mediated transport | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | HDA | Gene Ontology | mitochondrion | 6 |
| GO:0005768 | IEA | GOA Database | endosome | |
| GO:0000815 | ISS, IBA | Gene Ontology | ESCRT III complex | 1 7 |
| GO:0005771 | IDA IBA | Gene Ontology | multivesicular body | 1 2 |
| GO:0010008 | IDA | Gene Ontology | endosome membrane | 3 |
| GO:0005770 | IDA | Gene Ontology | late endosome | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005024 | Snf7 family |
| Mapman id | Description |
|---|---|
| 22.4.1.3.3 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.component VPS2/CHMP2 |