Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 2.1e-189 665.6 359 100.0
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 9.2e-92 341.3 325 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.0e-88 328.2 306 58.5
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.2e-75 287.7 242 61.2
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.1e-75 287.0 344 50.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.0e-74 283.1 296 54.1
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.0e-74 283.1 324 50.6
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.0e-74 283.1 321 51.4
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.1e-74 282.3 324 50.6
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.6e-74 282.0 329 50.2
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 8.6e-74 281.6 324 50.6
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.6e-74 281.6 331 51.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.1e-73 281.2 325 50.8
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.5e-73 280.0 331 51.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.3e-73 279.6 329 49.8
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.3e-73 279.6 321 52.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.3e-73 279.6 298 53.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 7.3e-73 278.5 313 51.4
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 9.5e-73 278.1 311 51.4
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 9.5e-73 278.1 327 49.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.2e-72 277.7 309 51.8
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.2e-72 277.7 337 50.7
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.2e-72 277.7 331 50.8
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 2.1e-72 276.9 328 50.6
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.8e-72 276.6 308 51.9
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.6e-72 276.2 313 50.5
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.7e-72 275.8 334 50.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 4.7e-72 275.8 327 49.5
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 6.2e-72 275.4 298 52.3
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 6.2e-72 275.4 290 55.2
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.2e-72 275.4 328 49.7
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 8.1e-72 275.0 294 52.4
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.1e-71 274.6 328 50.0
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.1e-71 274.6 317 52.4
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.1e-71 274.6 327 49.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.4e-71 274.2 348 49.1
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.8e-71 273.9 320 49.4
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.8e-71 273.9 323 50.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.8e-71 273.9 335 51.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.8e-71 273.9 323 51.7
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 2.4e-71 273.5 328 50.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 3.1e-71 273.1 294 52.4
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 3.1e-71 273.1 298 52.7
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.0e-71 272.7 298 51.7
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 5.2e-71 272.3 325 51.1
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 5.2e-71 272.3 328 49.7
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 6.8e-71 271.9 327 49.8
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 8.9e-71 271.6 308 51.9
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 8.9e-71 271.6 307 50.2
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 8.9e-71 271.6 328 50.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 8.9e-71 271.6 325 50.5
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.2e-70 271.2 308 51.9
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.2e-70 271.2 341 48.1
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.2e-70 271.2 338 47.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.5e-70 270.8 328 49.7
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.5e-70 270.8 332 50.0
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.0e-70 270.4 330 48.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-70 270.4 308 51.9
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-70 270.4 308 51.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.6e-70 270.0 308 50.0
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.4e-70 269.6 291 51.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 3.4e-70 269.6 345 48.4
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.4e-70 269.2 326 52.1
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.4e-70 269.2 332 49.4
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 5.8e-70 268.9 350 48.6
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 7.6e-70 268.5 308 51.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 7.6e-70 268.5 309 51.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.6e-70 268.5 302 51.7
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 9.9e-70 268.1 295 51.5
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.3e-69 267.7 335 49.6
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 1.3e-69 267.7 330 49.4
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.3e-69 267.7 340 48.2
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.3e-69 267.7 310 51.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.3e-69 267.7 319 50.5
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.7e-69 267.3 310 51.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.7e-69 267.3 335 47.8
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 2.2e-69 266.9 290 51.4
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.2e-69 266.9 333 49.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-69 265.8 308 51.0
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 4.9e-69 265.8 308 51.0
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 4.9e-69 265.8 308 51.0
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 6.4e-69 265.4 293 50.9
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 6.4e-69 265.4 302 49.7
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 6.4e-69 265.4 331 48.6
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 6.4e-69 265.4 296 52.0
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 6.4e-69 265.4 336 47.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 8.4e-69 265.0 347 48.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.1e-68 264.6 315 50.2
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.1e-68 264.6 292 52.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.9e-68 263.8 345 48.4
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-68 263.5 270 55.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 5.4e-68 262.3 295 51.9
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 7.1e-68 261.9 327 49.5
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 7.1e-68 261.9 331 48.9
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.6e-67 260.8 322 47.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.6e-67 260.8 293 51.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-67 260.8 329 48.9
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.1e-67 260.4 332 48.5
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.1e-67 260.4 343 46.6
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.5e-67 259.6 333 49.8
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 4.6e-67 259.2 326 47.9
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 6.0e-67 258.8 334 48.5
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 6.0e-67 258.8 325 50.5
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 7.8e-67 258.5 335 47.8
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.3e-66 257.7 326 47.2
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.9e-66 256.1 310 51.0
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 5.1e-66 255.8 290 48.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.1e-66 255.8 357 47.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 5.1e-66 255.8 327 49.5
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 6.6e-66 255.4 340 47.6
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.1e-65 254.6 312 47.4
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-65 254.2 304 52.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.3e-65 253.1 316 50.6
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 3.3e-65 253.1 333 48.6
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 7.3e-65 251.9 334 46.1
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-64 251.1 328 48.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.8e-64 250.0 306 50.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.1e-64 248.4 294 48.3
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.4e-63 246.9 291 49.1
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 4.0e-63 246.1 343 45.8
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 9.0e-63 245.0 326 46.3
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 9.0e-63 245.0 342 46.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.2e-62 244.6 388 42.3
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.5e-62 244.2 259 51.7
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.2e-61 240.4 410 40.0
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 2.2e-61 240.4 328 45.4
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.9e-60 237.3 236 54.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.2e-60 236.1 293 47.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-57 227.3 333 45.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.4e-55 221.1 349 42.4
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.5e-54 217.6 270 50.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-54 216.9 231 54.1
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.4e-52 210.3 330 41.8
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.2e-51 208.0 288 44.8
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.6e-51 206.1 312 43.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.0e-50 204.9 310 43.2
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 8.7e-50 201.8 292 41.4
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-49 201.4 177 60.5
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.6e-48 197.6 292 42.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.3e-45 188.0 339 40.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 6.5e-45 185.7 215 53.0
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.9e-44 184.1 266 43.6
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 8.2e-40 168.7 182 53.8
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.8e-37 159.8 250 44.0
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.8e-37 159.8 174 51.1
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.4e-36 157.9 366 38.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.1e-36 155.6 139 61.2
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 6.7e-34 149.1 153 52.3
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 3.3e-33 146.7 322 37.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.1e-31 139.8 171 51.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 3.0e-26 123.6 334 33.2
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.1e-25 121.7 186 46.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.3e-25 120.2 160 54.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.4e-23 114.0 80 65.0
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.3e-23 112.8 167 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.5e-21 105.9 82 68.3
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 7.4e-17 92.4 114 49.1
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.0e-10 72.0 120 41.7
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.7e-08 63.5 98 43.9
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 9.1e-07 58.9 60 55.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 7.7e-06 55.8 76 42.1


User provided reference genes

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