Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.1e-28 128.3 61 100.0
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 7.4e-26 119.8 61 91.8
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 6.9e-24 113.2 58 87.9
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.4e-16 89.0 55 76.4
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.0e-15 85.1 58 67.2
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.3e-14 82.4 47 72.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 9.7e-10 66.2 63 50.8
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 9.7e-10 66.2 45 57.8
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.2e-09 65.1 49 63.3
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.2e-09 65.1 53 60.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.8e-09 64.7 50 58.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.8e-09 64.7 49 61.2
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.8e-09 64.7 48 62.5
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.8e-09 64.7 50 56.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.7e-09 64.3 50 58.0
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.7e-09 64.3 48 64.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.7e-09 64.3 63 50.8
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 4.8e-09 63.9 49 61.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 4.8e-09 63.9 48 64.6
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 4.8e-09 63.9 48 64.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 4.8e-09 63.9 63 49.2
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 4.8e-09 63.9 50 58.0
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 4.8e-09 63.9 48 60.4
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.3e-09 63.5 48 62.5
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 6.3e-09 63.5 61 52.5
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 6.3e-09 63.5 50 60.0
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 6.3e-09 63.5 50 58.0
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 6.3e-09 63.5 50 56.0
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.3e-09 63.5 53 58.5
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 8.2e-09 63.2 54 55.6
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 8.2e-09 63.2 50 56.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 8.2e-09 63.2 50 56.0
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 8.2e-09 63.2 50 58.0
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 8.2e-09 63.2 50 60.0
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 8.2e-09 63.2 48 62.5
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.1e-08 62.8 51 56.9
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.1e-08 62.8 51 56.9
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.1e-08 62.8 54 51.9
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.1e-08 62.8 50 56.0
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.1e-08 62.8 50 56.0
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.1e-08 62.8 62 51.6
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.1e-08 62.8 62 51.6
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.4e-08 62.4 48 58.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.4e-08 62.4 48 58.3
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.4e-08 62.4 48 58.3
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.4e-08 62.4 48 60.4
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.4e-08 62.4 43 58.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.4e-08 62.4 48 60.4
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.8e-08 62.0 49 57.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.8e-08 62.0 48 58.3
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.8e-08 62.0 53 56.6
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.8e-08 62.0 48 58.3
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.8e-08 62.0 48 60.4
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.8e-08 62.0 48 58.3
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.8e-08 62.0 53 58.5
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.4e-08 61.6 50 54.0
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.4e-08 61.6 48 58.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 2.4e-08 61.6 60 50.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 2.4e-08 61.6 44 56.8
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.4e-08 61.6 50 54.0
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.4e-08 61.6 50 54.0
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.4e-08 61.6 50 54.0
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 56.2
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 56.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 56.2
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 56.2
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 58.3
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.1e-08 61.2 53 56.6
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 3.1e-08 61.2 48 58.3
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.1e-08 60.8 50 56.0
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 5.3e-08 60.5 44 50.0
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.9e-08 60.1 48 60.4
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 6.9e-08 60.1 48 60.4
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 6.9e-08 60.1 60 50.0
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.9e-08 60.1 48 54.2
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.9e-08 60.1 50 52.0
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.9e-08 60.1 50 52.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 6.9e-08 60.1 50 52.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 9.1e-08 59.7 48 54.2
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 9.1e-08 59.7 49 55.1
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 9.1e-08 59.7 50 50.0
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 9.1e-08 59.7 53 54.7
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 9.1e-08 59.7 48 56.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-07 59.3 63 46.0
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.2e-07 59.3 48 54.2
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.2e-07 59.3 53 56.6
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.2e-07 59.3 50 54.0
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.2e-07 59.3 48 56.2
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.2e-07 59.3 48 52.1
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-07 58.9 60 48.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 1.5e-07 58.9 60 48.3
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.5e-07 58.9 60 48.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.0e-07 58.5 48 52.1
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.0e-07 58.5 48 56.2
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.0e-07 58.5 48 56.2
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.6e-07 58.2 63 47.6
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.6e-07 58.2 50 54.0
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.6e-07 58.2 53 54.7
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 64 45.3
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 3.4e-07 57.8 64 45.3
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 3.4e-07 57.8 50 52.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.5e-07 57.4 51 58.8
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 7.7e-07 56.6 50 50.0
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 7.7e-07 56.6 50 54.0
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 7.7e-07 56.6 50 54.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.0e-06 56.2 48 52.1
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.7e-06 55.5 50 50.0
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.7e-06 55.5 41 58.5


User provided reference genes

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