Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 0.0e+00 1172.5 596 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 5.4e-190 668.3 611 59.1
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.9e-182 643.3 620 56.3
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 4.2e-182 642.1 613 56.3
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 3.2e-174 615.9 594 55.1
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.3e-171 605.9 599 53.3
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 4.8e-170 602.1 597 53.1
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 8.2e-170 601.3 599 52.9
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 5.9e-168 595.1 605 52.6
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 5.0e-167 592.0 604 51.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.1e-165 586.6 603 52.7
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.8e-164 583.6 615 51.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 5.1e-164 582.0 601 50.1
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.5e-163 579.7 596 51.3
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 7.4e-163 578.2 607 49.8
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 3.7e-162 575.9 605 51.1
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 6.3e-162 575.1 601 50.9
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 8.2e-162 574.7 606 50.3
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.4e-161 573.2 597 50.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.4e-161 573.2 612 50.5
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 6.9e-161 571.6 599 50.3
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 6.9e-161 571.6 605 50.1
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.5e-160 568.9 601 50.9
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.7e-159 567.0 605 51.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.8e-159 565.8 605 50.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 8.5e-159 564.7 600 50.7
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.9e-158 563.5 593 51.6
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 7.2e-158 561.6 623 49.4
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 9.4e-158 561.2 598 50.2
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.2e-157 560.8 598 50.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.6e-157 560.5 601 50.6
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.1e-157 560.1 601 50.6
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.6e-157 559.3 598 50.3
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 4.7e-157 558.9 606 49.5
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 4.7e-157 558.9 639 46.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 7.9e-157 558.1 598 50.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.8e-156 557.0 599 51.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 2.3e-156 556.6 620 48.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.0e-156 556.2 602 49.8
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 5.1e-156 555.4 595 50.8
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 5.1e-156 555.4 602 49.7
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 8.8e-156 554.7 601 49.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.1e-155 554.3 598 50.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-155 553.9 598 49.2
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.0e-155 553.5 595 49.1
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 2.0e-155 553.5 598 49.2
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.6e-155 553.1 604 48.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.8e-154 549.7 622 48.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.1e-153 547.7 599 48.4
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.4e-153 547.4 603 48.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.4e-153 547.4 603 47.9
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.4e-153 547.4 603 47.9
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.4e-153 547.4 594 50.3
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.8e-153 547.0 607 48.1
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.8e-153 547.0 594 48.8
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.4e-153 546.6 605 48.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 3.1e-153 546.2 596 49.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 4.1e-153 545.8 609 49.1
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 7.0e-153 545.0 604 48.5
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 9.1e-153 544.7 594 48.5
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.0e-152 543.5 603 47.6
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 3.5e-152 542.7 596 48.5
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.5e-152 542.7 601 48.4
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 5.9e-152 542.0 600 48.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-151 540.4 597 48.9
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.8e-151 539.3 605 49.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.1e-150 537.7 604 48.3
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.1e-150 537.7 581 49.2
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.9e-150 537.0 595 47.4
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.2e-150 536.2 603 48.3
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 9.4e-150 534.6 610 48.2
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.2e-149 534.3 729 45.3
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.1e-149 533.5 592 49.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.7e-149 533.1 609 47.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.4e-148 530.8 592 49.7
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.0e-148 529.6 606 48.0
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 3.9e-148 529.3 572 49.3
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 5.2e-148 528.9 596 47.8
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 4.4e-147 525.8 562 49.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 5.7e-147 525.4 599 48.1
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.7e-146 523.9 600 46.5
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.4e-145 520.8 600 45.8
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 7.0e-145 518.5 605 46.3
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 9.1e-145 518.1 600 46.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.6e-144 517.3 618 47.2
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.0e-144 516.9 599 48.9
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.5e-144 515.8 606 46.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.0e-143 514.6 605 47.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.2e-143 513.5 600 47.0
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 3.8e-143 512.7 606 46.5
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 5.0e-143 512.3 596 46.3
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.5e-142 510.8 602 46.8
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.5e-142 510.8 601 46.1
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 3.2e-142 509.6 598 47.2
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 7.2e-142 508.4 586 46.6
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 7.2e-142 508.4 600 46.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.1e-141 506.9 608 46.7
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.7e-141 506.5 599 46.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 8.0e-141 505.0 600 46.2
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.8e-140 503.8 596 45.6
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.6e-139 500.0 608 45.6
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.4e-139 499.6 536 48.5
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.4e-139 499.2 601 45.4
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.2e-138 496.9 542 47.8
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 4.8e-138 495.7 602 44.9
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 3.1e-137 493.0 579 46.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 3.1e-137 493.0 596 46.1
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 5.3e-137 492.3 594 45.1
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.3e-137 492.3 594 45.1
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.3e-137 492.3 594 45.3
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 7.0e-137 491.9 589 47.2
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 4.5e-136 489.2 593 47.2
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 5.9e-136 488.8 600 46.0
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.7e-135 487.3 595 45.7
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.5e-135 485.0 594 45.1
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.5e-134 482.3 596 45.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.2e-131 474.6 584 46.2
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.3e-130 471.1 526 48.1
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 9.1e-129 464.9 590 43.7
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.6e-128 464.2 755 39.7
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.6e-128 464.2 448 51.3
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.5e-126 457.6 597 43.6
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.5e-126 457.6 597 43.6
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 4.0e-124 449.5 595 44.0
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.4e-123 446.4 593 42.0
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 2.3e-119 433.7 582 41.8
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 5.8e-115 419.1 591 42.0
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.8e-115 419.1 438 50.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 2.5e-102 377.1 476 45.6
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.6e-88 331.3 392 46.7
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.9e-86 324.3 643 35.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 7.3e-86 322.4 501 39.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.2e-80 305.1 279 53.4
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-74 285.0 318 47.5
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.7e-74 284.6 356 45.2
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.8e-74 283.5 632 34.8
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.0e-60 235.7 353 39.7
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 6.7e-55 219.5 267 45.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-45 188.7 181 54.1
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 4.8e-45 186.8 165 55.2
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.0e-42 179.1 139 60.4
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.7e-42 178.3 225 45.8
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.6e-38 164.5 382 33.5
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.5e-35 154.1 92 70.7
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.3e-30 137.5 120 50.8
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.7e-29 135.2 78 83.3
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.9e-27 126.7 112 49.1
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.3e-26 125.6 112 48.2
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.8e-23 113.2 120 49.2
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.5e-14 85.5 126 40.5
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.4e-14 84.0 191 34.6
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 7.5e-14 83.2 63 58.7
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 9.8e-14 82.8 175 30.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.1e-12 79.3 80 48.8
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.1e-12 79.3 67 55.2
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.1e-12 77.8 56 58.9
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 9.1e-12 76.3 124 37.9
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 4.5e-11 73.9 105 45.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.3e-10 72.4 62 48.4
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.9e-07 59.7 32 81.2
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.9e-07 59.7 32 81.2
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 3.4e-06 57.8 84 41.7


User provided reference genes

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