Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_16110 Physcomitrium patens HOM05D000528 ORTHO05D015583 1.1e-19 99.0 51 100.0
Pp3c21_12020 Physcomitrium patens HOM05D000528 ORTHO05D000999 5.6e-11 70.1 48 70.8
Pp3c21_12080 Physcomitrium patens HOM05D000528 ORTHO05D000999 5.6e-11 70.1 48 70.8
Pp3c5_6990 Physcomitrium patens HOM05D000528 ORTHO05D015583 2.8e-10 67.8 48 70.8
SMO347G0425 Selaginella moellendorffii HOM05D000528 ORTHO05D000999 1.5e-08 62.0 48 62.5
Pp3c18_8290 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.6e-08 61.2 48 56.2
Mapoly0003s0171 Marchantia polymorpha HOM05D000528 ORTHO05D000999 3.4e-08 60.8 48 60.4
Pp3c18_8730 Physcomitrium patens HOM05D000528 ORTHO05D000999 5.8e-08 60.1 48 58.3
Pp3c3_32910 Physcomitrium patens HOM05D000528 ORTHO05D019404 5.8e-08 60.1 48 64.6
AagrBONN_evm.TU.Sc2ySwM_117.395 Anthoceros agrestis HOM05D000528 ORTHO05D000999 1.7e-07 58.5 48 58.3
Gohir.A05G037300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.7e-07 58.5 48 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2707 Anthoceros agrestis HOM05D000528 ORTHO05D000999 2.2e-07 58.2 48 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2712 Anthoceros agrestis HOM05D000528 ORTHO05D000999 2.2e-07 58.2 48 60.4
TWI63G0826 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 2.2e-07 58.2 48 60.4
Gohir.D07G018100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 3.8e-07 57.4 48 60.4
Gorai.001G018700 Gossypium raimondii HOM05D000528 ORTHO05D000999 3.8e-07 57.4 48 60.4
Gohir.D05G038800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.9e-07 57.0 48 58.3
Gorai.009G039300 Gossypium raimondii HOM05D000528 ORTHO05D000999 4.9e-07 57.0 48 58.3
Rhsim02G0256900 Rhododendron simsii HOM05D000528 ORTHO05D000999 4.9e-07 57.0 48 58.3
vmacro06377 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 4.9e-07 57.0 48 58.3
Manes.16G088500 Manihot esculenta HOM05D000528 ORTHO05D000999 6.4e-07 56.6 48 60.4
Cfa021584 Carpinus fangiana HOM05D000528 ORTHO05D000999 8.4e-07 56.2 48 58.3
Haze_21237 Corylus avellana HOM05D000528 ORTHO05D000999 8.4e-07 56.2 48 58.3
Thecc.09G067600 Theobroma cacao HOM05D000528 ORTHO05D000999 8.4e-07 56.2 48 58.3
Ca_21350_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Dinv25491 Davidia involucrata HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Dinv42440 Davidia involucrata HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Eucgr.C00756 Eucalyptus grandis HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Lj4g0008783 Lotus japonicus HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
MBI13_g05971_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
MD02G1105600 Malus domestica HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Manes.03G054900 Manihot esculenta HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Medtr4g124430 Medicago truncatula HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Psat4g020000 Pisum sativum HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Potri.006G216900 Populus trichocarpa HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Prupe.7G189500 Prunus persica HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Sabra06G0167300 Salix brachista HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Solyc12g017830.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
Sopen12g008630 Solanum pennellii HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
TWI34G0978 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
GSVIVG01014993001 Vitis vinifera HOM05D000528 ORTHO05D000999 1.1e-06 55.8 48 58.3
CANSAT56G4237 Cannabis sativa HOM05D000528 ORTHO05D000999 1.4e-06 55.5 48 56.2
CiPaw.08G000100 Carya illinoinensis HOM05D000528 ORTHO05D000999 1.4e-06 55.5 48 58.3
Ciclev10007246m.g Citrus clementina HOM05D000528 ORTHO05D000999 1.4e-06 55.5 48 58.3
ECA248G1999 Erigeron canadensis HOM05D000528 ORTHO05D000999 1.4e-06 55.5 48 60.4
Gohir.A07G018300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.4e-06 55.5 48 58.3
Aqoxy6G02695 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
BcaB02g10779 Brassica carinata HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
BcaC01g02206 Brassica carinata HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
A06p26630 Brassica napus HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
C03p67850 Brassica napus HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
BolSC21t60253H Brassica oleracea HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
BraA06t25597Z Brassica rapa HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
Cpa.g.sc82.36 Carica papaya HOM05D000528 ORTHO05D015583 1.9e-06 55.1 48 58.3
CDE06G1665 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
Sp5g17840 Schrenkiella parvula HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 58.3
Sc03g0004600 Simmondsia chinensis HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 60.4
unitig_699.g19739 Utricularia gibba HOM05D000528 ORTHO05D000999 1.9e-06 55.1 48 54.2
AL5G21370 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
AT3G43300 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
Carub.0005s0916 Capsella rubella HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
CARHR153370 Cardamine hirsuta HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
ECA234G2762 Erigeron canadensis HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
Thhalv10002369m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
FvH4_1g09670 Fragaria vesca HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN19G1221 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN23G1517 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN23G1603 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN26G1955 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN26G3208 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
FAN28G2663 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
Glyma.13G115800 Glycine max HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
MD15G1225500 Malus domestica HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
Nn6g31501 Nelumbo nucifera HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
Phvul.003G126000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
PGR142G1496 Punica granatum HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
RcHm_v2.0_Chr2g0096511 Rosa chinensis HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
THA.LOC104799601 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 58.3
TAR626G1794 Trochodendron aralioides HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
VMungo1215G1674 Vigna mungo HOM05D000528 ORTHO05D000999 2.4e-06 54.7 48 56.2
COL.COLO4_21179 Corchorus olitorius HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
Glyma.17G044000 Glycine max HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
HanXRQChr16g0521011 Helianthus annuus HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
Lsat_1_v5_gn_4_40140 Lactuca sativa HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
Lj1A1154G40 Lonicera japonica HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 58.3
Nitab4.5_0006028g0020 Nicotiana tabacum HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
Oeu007685.1 Olea europaea HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
PSO170G1988 Papaver somniferum HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
SalBow3G2418 Salvia bowleyana HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
TPR.G12643 Trifolium pratense HOM05D000528 ORTHO05D000999 3.2e-06 54.3 48 56.2
Actinidia39603 Actinidia chinensis HOM05D000528 ORTHO05D000999 4.2e-06 53.9 48 56.2
CSS0027335 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 4.2e-06 53.9 48 56.2
Cc09_g04400 Coffea canephora HOM05D000528 ORTHO05D000999 4.2e-06 53.9 48 56.2
Peaxi162Scf00006g03411 Petunia axillaris HOM05D000528 ORTHO05D000999 4.2e-06 53.9 48 56.2
Sed0012879 Sechium edule HOM05D000528 ORTHO05D000999 4.2e-06 53.9 48 56.2
Aa31LG4G12930 Aethionema arabicum HOM05D000528 ORTHO05D000999 5.4e-06 53.5 48 56.2
ATR0006G069 Amborella trichopoda HOM05D000528 ORTHO05D000999 5.4e-06 53.5 48 56.2
PSO017G2681 Papaver somniferum HOM05D000528 ORTHO05D000999 5.4e-06 53.5 48 54.2
Lalb_Chr07g0181491 Lupinus albus HOM05D000528 ORTHO05D000999 7.1e-06 53.1 48 54.2
Lalb_Chr12g0200411 Lupinus albus HOM05D000528 ORTHO05D000999 7.1e-06 53.1 48 54.2
Nitab4.5_0000219g0110 Nicotiana tabacum HOM05D000528 ORTHO05D000999 7.1e-06 53.1 48 54.2
SGA_v2.0_scaffold122G33228 Striga asiatica HOM05D000528 ORTHO05D000999 7.1e-06 53.1 48 56.2
THA.LOC104810976 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 7.1e-06 53.1 48 58.3
Ah.01g016930 Amaranthus hybridus HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 56.2
arahy.Tifrunner.gnm1.ann1.JF9XSQ Arachis hypogaea HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 54.2
arahy.Tifrunner.gnm1.ann1.Z2MV1Y Arachis hypogaea HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 54.2
AUR62023914 Chenopodium quinoa HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 56.2
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 56.2
Oeu062026.1 Olea europaea HOM05D000528 ORTHO05D000999 9.3e-06 52.8 48 54.2


User provided reference genes

Program Settings