Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 0.0e+00 1254.2 627 100.0
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.1e-145 521.2 437 58.8
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.1e-145 521.2 609 47.8
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 9.6e-145 518.1 604 47.5
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 2.4e-143 513.5 610 47.7
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 2.4e-143 513.5 611 47.3
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 4.0e-143 512.7 605 46.8
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 6.9e-143 511.9 610 47.0
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 9.0e-143 511.5 609 46.5
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 3.4e-142 509.6 608 47.2
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 4.4e-142 509.2 607 46.1
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 9.9e-142 508.1 607 47.1
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 9.9e-142 508.1 607 47.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 4.9e-141 505.8 608 46.2
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 8.4e-141 505.0 609 47.1
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 8.4e-141 505.0 609 46.3
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.9e-140 503.8 612 44.3
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 2.4e-140 503.4 606 46.9
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 3.2e-140 503.1 609 46.1
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.2e-139 501.1 610 45.9
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.6e-139 500.7 614 46.6
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.6e-139 500.7 609 47.0
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 2.7e-139 500.0 608 45.7
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 2.7e-139 500.0 609 46.8
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 2.7e-139 500.0 611 45.7
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 4.6e-139 499.2 606 46.4
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 7.9e-139 498.4 603 47.1
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.3e-138 496.9 607 46.1
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.3e-138 496.9 607 46.8
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 2.3e-138 496.9 606 46.7
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 3.9e-138 496.1 651 45.3
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 5.1e-138 495.7 605 45.8
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 6.6e-138 495.4 608 46.1
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 8.7e-138 495.0 609 46.8
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 5.6e-137 492.3 604 45.7
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 5.6e-137 492.3 613 46.2
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 5.6e-137 492.3 615 46.3
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 5.6e-137 492.3 608 46.7
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 7.3e-137 491.9 607 45.0
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 9.6e-137 491.5 605 45.3
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.3e-136 491.1 608 46.4
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.6e-136 490.7 609 46.3
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 2.1e-136 490.3 610 46.6
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.1e-136 490.3 618 46.1
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 2.8e-136 490.0 608 45.6
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 3.6e-136 489.6 611 46.3
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.2e-136 488.8 607 46.3
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.1e-135 488.0 606 45.4
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 1.4e-135 487.6 633 46.0
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 3.1e-135 486.5 607 45.8
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 5.3e-135 485.7 609 45.6
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.0e-134 483.8 607 44.8
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 5.8e-134 482.3 608 46.1
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 2.2e-133 480.3 611 45.3
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 3.8e-133 479.6 606 45.4
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 8.4e-133 478.4 609 45.8
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 8.4e-133 478.4 608 45.4
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.4e-132 476.9 609 44.8
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 3.2e-132 476.5 608 45.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.2e-131 474.6 684 43.6
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 2.1e-131 473.8 613 43.9
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 2.7e-131 473.4 594 45.5
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 7.9e-131 471.9 657 42.6
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.3e-130 471.1 606 45.0
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 1.1e-129 468.0 613 43.7
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.5e-129 467.6 620 44.8
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.5e-129 466.8 613 45.2
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 7.4e-129 465.3 648 43.1
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 9.6e-129 464.9 581 45.1
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.3e-128 464.5 609 44.0
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 3.7e-128 463.0 607 43.5
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 6.2e-128 462.2 586 45.1
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 1.1e-127 461.5 604 42.7
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 9.0e-127 458.4 571 46.9
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 9.0e-127 458.4 613 44.7
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.0e-125 454.9 655 42.3
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 3.8e-125 453.0 610 44.1
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.9e-124 450.7 611 43.7
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 3.2e-124 449.9 608 42.8
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 3.5e-123 446.4 608 42.4
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.0e-122 444.9 611 43.9
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.8e-122 444.1 597 42.4
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 3.0e-122 443.4 528 47.3
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 3.1e-119 433.3 567 45.1
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.3e-117 427.9 601 42.8
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 3.2e-116 423.3 531 45.6
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 9.3e-116 421.8 632 41.6
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 3.0e-114 416.8 568 43.1
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 6.7e-114 415.6 571 42.7
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 8.7e-114 415.2 616 42.5
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.5e-113 413.7 700 38.1
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.3e-112 411.4 483 46.4
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 3.1e-111 406.8 533 45.8
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.3e-111 406.0 547 43.3
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 3.4e-110 403.3 600 39.5
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 2.2e-101 374.0 602 38.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.2e-100 370.2 491 43.6
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.2e-96 357.5 673 36.3
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-88 329.3 626 35.6
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 4.2e-84 316.6 351 48.4
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.1e-79 300.4 403 42.7
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.7e-72 278.1 374 43.0
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 5.4e-47 193.4 296 39.9
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.3e-45 188.7 246 44.7
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.4e-34 152.1 537 28.9
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.8e-34 151.8 255 36.1
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 2.4e-34 151.4 211 47.4
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 1.5e-28 132.1 103 57.3
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 6.4e-24 116.7 171 43.3
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 5.3e-18 97.1 405 28.6
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 7.6e-17 93.2 77 51.9
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 7.9e-14 83.2 104 48.1
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.9e-12 78.6 151 36.4
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 9.6e-12 76.3 104 42.3
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 2.4e-10 71.6 60 46.7
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 2.4e-10 71.6 425 23.1
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 2.0e-09 68.6 586 21.2
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 5.8e-09 67.0 420 24.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 5.8e-09 67.0 440 23.6
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 7.6e-09 66.6 57 57.9
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 1.0e-08 66.2 422 23.2
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 2.9e-08 64.7 433 21.9
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 3.8e-08 64.3 426 23.0
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 3.8e-08 64.3 425 22.8
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 3.8e-08 64.3 425 22.8
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 4.9e-08 63.9 435 24.4
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 4.9e-08 63.9 356 22.8
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 4.9e-08 63.9 425 23.1
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 8.4e-08 63.2 349 23.8
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.1e-07 62.8 361 22.2
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.1e-07 62.8 433 22.9
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.4e-07 62.4 419 23.2
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 1.4e-07 62.4 363 23.7
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.4e-07 62.4 363 23.7
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.5e-07 61.6 406 22.7
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 2.5e-07 61.6 361 22.2
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 2.5e-07 61.6 361 22.4
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 3.2e-07 61.2 361 22.4
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 3.2e-07 61.2 361 22.4
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 3.2e-07 61.2 361 22.2
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 3.2e-07 61.2 356 23.0
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 3.2e-07 61.2 438 23.5
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 4.2e-07 60.8 75 46.7
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 4.2e-07 60.8 428 23.6
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 4.2e-07 60.8 430 22.6
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 4.2e-07 60.8 361 22.2
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 4.2e-07 60.8 361 21.6
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 5.5e-07 60.5 378 23.0
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 5.5e-07 60.5 360 22.5
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 5.5e-07 60.5 423 22.5
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 5.5e-07 60.5 356 23.0
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 5.5e-07 60.5 358 22.3
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 7.1e-07 60.1 361 22.2
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 9.3e-07 59.7 426 23.0
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 9.3e-07 59.7 361 22.4
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 9.3e-07 59.7 544 22.8
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.2e-06 59.3 416 23.3
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-06 59.3 362 22.4
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.2e-06 59.3 420 21.2
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.6e-06 58.9 355 22.5
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.1e-06 58.5 356 22.2
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 2.1e-06 58.5 362 22.1
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 2.1e-06 58.5 361 22.4
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 2.7e-06 58.2 361 21.9
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 3.5e-06 57.8 361 22.4
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 3.5e-06 57.8 362 22.1
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.6e-06 57.4 428 22.7


User provided reference genes

Program Settings