Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.0e-48 196.4 102 100.0
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.0e-44 182.2 96 97.9
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 7.7e-44 180.3 95 97.9
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 7.0e-37 157.1 101 81.2
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.8e-29 132.5 101 70.3
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.8e-25 118.6 100 64.0
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 2.7e-20 102.1 99 54.5
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 2.3e-19 99.0 101 52.5
Pp3c19_350 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.3e-19 99.0 57 86.0
Pp3c5_29140 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.0e-19 97.8 53 88.7
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 4.3e-18 94.7 99 51.5
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.0e-16 90.1 56 75.0
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.2e-15 86.7 101 48.5
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 7.5e-15 84.0 100 47.0
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.3e-14 83.2 101 45.5
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 1.7e-14 82.8 100 46.0
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 1.7e-14 82.8 101 48.5
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 2.9e-14 82.0 100 45.0
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 6.4e-14 80.9 100 47.0
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 6.4e-14 80.9 99 44.4
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.1e-13 80.1 100 46.0
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.4e-13 79.7 99 45.5
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 1.4e-13 79.7 100 49.0
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 1.4e-13 79.7 101 46.5
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.4e-13 79.7 101 46.5
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 1.8e-13 79.3 100 42.0
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 1.8e-13 79.3 100 43.0
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 2.4e-13 79.0 100 44.0
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 3.2e-13 78.6 100 45.0
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 3.2e-13 78.6 100 42.0
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 4.1e-13 78.2 101 41.6
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 4.1e-13 78.2 99 43.4
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 4.1e-13 78.2 100 43.0
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 4.1e-13 78.2 100 45.0
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 5.4e-13 77.8 101 41.6
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 5.4e-13 77.8 101 41.6
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 5.4e-13 77.8 101 41.6
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 5.4e-13 77.8 101 41.6
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 5.4e-13 77.8 99 45.5
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 5.4e-13 77.8 100 43.0
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 5.4e-13 77.8 101 41.6
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 7.0e-13 77.4 93 44.1
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 7.0e-13 77.4 101 42.6
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 7.0e-13 77.4 101 42.6
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 7.0e-13 77.4 100 43.0
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 7.0e-13 77.4 100 43.0
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 7.0e-13 77.4 100 43.0
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 7.0e-13 77.4 100 45.0
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 7.0e-13 77.4 100 44.0
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 41.6
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 41.6
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 41.6
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 41.6
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 41.6
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 9.2e-13 77.0 100 46.0
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 9.2e-13 77.0 101 43.6
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 1.2e-12 76.6 101 40.6
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 1.2e-12 76.6 101 40.6
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.2e-12 76.6 100 45.0
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.2e-12 76.6 100 44.0
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 1.6e-12 76.3 102 42.2
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 1.6e-12 76.3 100 42.0
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.6e-12 76.3 100 42.0
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 1.6e-12 76.3 100 44.0
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 1.6e-12 76.3 100 44.0
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 2.0e-12 75.9 100 42.0
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 2.0e-12 75.9 100 42.0
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 2.0e-12 75.9 101 41.6
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 2.0e-12 75.9 100 43.0
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 2.0e-12 75.9 102 38.2
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 2.0e-12 75.9 100 42.0
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 2.7e-12 75.5 101 41.6
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 2.7e-12 75.5 100 42.0
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 2.7e-12 75.5 101 43.6
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.7e-12 75.5 101 44.6
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 3.5e-12 75.1 93 43.0
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 45.0
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 45.0
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 43.0
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 43.0
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 45.0
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 40.0
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 3.5e-12 75.1 100 44.0
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 4.6e-12 74.7 100 42.0
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 4.6e-12 74.7 100 44.0
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 4.6e-12 74.7 100 43.0
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 4.6e-12 74.7 100 43.0
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 4.6e-12 74.7 100 42.0
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 6.0e-12 74.3 101 47.5
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 6.0e-12 74.3 100 44.0
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 7.8e-12 73.9 101 43.6
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 7.8e-12 73.9 101 43.6
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 7.8e-12 73.9 100 45.0
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 1.0e-11 73.6 100 42.0
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 1.0e-11 73.6 101 41.6
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 1.0e-11 73.6 102 43.1
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 1.3e-11 73.2 100 40.0
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 1.7e-11 72.8 101 40.6
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 1.7e-11 72.8 99 44.4
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 1.7e-11 72.8 99 41.4
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 1.7e-11 72.8 101 41.6
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 1.7e-11 72.8 100 43.0
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 2.3e-11 72.4 100 42.0
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 3.0e-11 72.0 99 40.4
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 3.0e-11 72.0 100 42.0
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 3.0e-11 72.0 100 40.0
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 3.9e-11 71.6 100 39.0
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 3.9e-11 71.6 102 42.2
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 3.9e-11 71.6 102 42.2
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 3.9e-11 71.6 101 41.6
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 5.0e-11 71.2 99 45.5
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 5.0e-11 71.2 99 39.4
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 6.6e-11 70.9 100 42.0
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 6.6e-11 70.9 100 41.0
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 8.6e-11 70.5 100 41.0
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 1.1e-10 70.1 101 43.6
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 41.0
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 40.0
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 40.0
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 40.0
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 40.0
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 1.9e-10 69.3 100 40.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-10 67.8 92 40.2
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.1e-09 65.9 101 38.6
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 3.1e-08 62.0 101 37.6
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.2e-07 60.1 99 38.4
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.4e-07 58.2 101 34.7
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 9.8e-07 57.0 100 36.0
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.7e-06 55.1 57 45.6


User provided reference genes

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