Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 0.0e+00 5279.9 2742 100.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 0.0e+00 1378.2 2844 35.5
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 0.0e+00 1114.0 2842 31.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.1e-280 971.8 2724 30.7
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 2.0e-234 818.1 2781 27.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 5.5e-229 800.0 2734 27.7
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.0e-223 781.6 2417 29.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 7.2e-213 746.5 2767 26.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 6.1e-212 743.4 2772 26.6
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 3.0e-211 741.1 2800 26.8
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 1.3e-209 735.7 2797 26.2
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 6.3e-209 733.4 2842 26.7
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 5.4e-208 730.3 2752 26.7
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 7.0e-208 729.9 2810 26.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.6e-207 728.8 2564 27.2
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.5e-205 722.2 2691 27.0
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 3.7e-201 707.6 2710 26.3
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 8.3e-201 706.4 2773 26.9
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 8.3e-201 706.4 2765 26.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 3.2e-200 704.5 2709 26.4
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 1.6e-199 702.2 2763 26.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 2.7e-199 701.4 2805 27.2
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.0e-198 699.5 2757 26.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-196 692.6 2763 26.5
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 1.4e-195 689.1 2791 26.4
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 3.1e-195 688.0 2756 25.8
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 6.8e-195 686.8 2724 26.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 1.5e-194 685.6 2736 25.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 4.9e-193 680.6 2832 26.0
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.1e-189 669.5 2931 26.4
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 2.5e-189 668.3 2779 25.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 9.5e-189 666.4 2719 25.9
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 1.2e-188 666.0 2737 25.1
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 3.1e-187 661.4 2709 26.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 2.6e-186 658.3 2740 25.7
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 1.3e-185 656.0 2641 26.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 1.3e-185 656.0 2712 25.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 3.7e-185 654.4 2747 26.1
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 3.7e-185 654.4 2759 25.9
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 6.4e-185 653.7 2647 26.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 7.1e-184 650.2 2392 27.1
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 7.8e-183 646.7 2749 25.8
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 6.6e-182 643.7 2827 25.5
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 1.1e-176 626.3 2776 25.9
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 3.2e-176 624.8 2692 25.8
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 7.1e-176 623.6 2812 25.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 1.6e-175 622.5 2666 25.5
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.7e-175 621.7 2739 25.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 1.0e-174 619.8 2818 24.8
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 3.0e-174 618.2 2687 25.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 5.1e-174 617.5 2674 25.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-173 615.1 2757 26.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.2e-172 612.8 2806 24.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.8e-172 611.7 2724 25.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 4.7e-172 610.9 2678 26.5
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 8.1e-172 610.1 2694 24.9
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 7.6e-170 603.6 2755 25.8
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 9.9e-170 603.2 2773 24.5
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 2.2e-169 602.1 2775 25.5
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 4.9e-169 600.9 2804 25.2
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 1.4e-168 599.4 2735 25.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 5.4e-168 597.4 2764 25.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 1.6e-167 595.9 2743 24.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 5.6e-165 587.4 2775 25.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 9.6e-165 586.6 2696 25.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 2.1e-164 585.5 2799 25.4
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 1.2e-162 579.7 2790 25.9
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.1e-160 573.2 2721 25.4
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 2.7e-159 568.5 2462 25.1
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 3.5e-159 568.2 2747 24.5
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 8.1e-156 557.0 2480 24.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 9.0e-155 553.5 2787 24.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 4.5e-154 551.2 2743 24.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.7e-153 549.3 2700 24.7
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 2.9e-153 548.5 2596 25.3
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 9.3e-152 543.5 2759 24.8
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 4.3e-149 534.6 2754 24.7
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 1.8e-147 529.3 2607 24.2
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 1.1e-144 520.0 2806 24.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 4.2e-144 518.1 2517 24.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 4.8e-140 504.6 2839 24.7
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 3.1e-139 501.9 2688 24.2
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.4e-138 498.4 2405 26.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 6.1e-135 487.6 2629 24.6
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 1.4e-134 486.5 2179 26.1
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 8.8e-134 483.8 2714 23.6
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 6.5e-129 467.6 2270 25.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 2.2e-124 452.6 2699 23.9
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 6.3e-124 451.1 2151 23.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.8e-123 449.5 2708 23.5
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.3e-121 443.4 2340 23.5
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-119 436.8 915 31.7
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.8e-116 424.9 1938 25.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 3.5e-114 418.7 2237 24.4
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.9e-114 417.9 2423 24.4
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 8.5e-113 414.1 2329 24.2
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.2e-112 411.8 2432 24.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.7e-100 373.2 2347 23.1
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.7e-100 372.1 726 36.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 1.6e-98 366.7 2112 23.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.7e-89 336.7 1802 24.5
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.0e-89 335.1 952 28.9
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 3.3e-88 332.4 2560 22.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.3e-88 332.0 1292 25.5
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 7.3e-88 331.3 835 31.9
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.3e-84 320.5 1203 27.1
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 8.3e-84 317.8 783 29.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.6e-74 287.0 742 31.7
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.8e-74 284.6 812 29.7
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.6e-72 278.5 584 35.1
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.9e-70 271.2 1832 22.4
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.2e-69 270.8 643 33.6
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 3.6e-63 249.2 648 32.6
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.8e-61 241.9 370 35.1
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.9e-61 241.1 806 29.3
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-44 187.2 593 25.8
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 6.4e-44 185.3 524 26.5
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.9e-40 173.7 437 30.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 8.1e-39 168.3 336 35.7
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 6.9e-38 165.2 368 32.1
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-35 157.9 300 36.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 2.6e-29 136.7 366 26.5
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-28 134.4 272 34.2
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.3e-28 134.4 605 27.4
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.1e-27 131.3 676 25.0
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.4e-27 131.0 165 40.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.5e-27 130.2 1233 21.3
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 5.5e-27 129.0 177 45.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.3e-27 128.3 398 26.4
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.3e-24 119.4 242 35.1
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.2e-20 107.1 131 36.6
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 5.7e-16 92.4 207 28.5
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.7e-15 89.7 95 41.1
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.8e-14 87.4 185 30.8
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.9e-14 85.5 117 38.5
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.5e-13 82.8 226 29.2
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.0e-09 70.1 159 33.3
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.1e-09 69.3 122 36.9
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 3.3e-08 66.6 72 41.7
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 5.7e-08 65.9 79 35.4
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.7e-07 64.3 60 48.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.7e-07 64.3 71 42.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.7e-07 64.3 71 42.3
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 9.1e-06 58.5 67 37.3


User provided reference genes

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