Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 0.0e+00 1616.3 868 100.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.3e-203 714.1 835 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.6e-201 706.4 836 48.0
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 5.7e-180 635.6 840 43.3
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.8e-179 633.3 832 43.4
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 6.3e-179 632.1 830 43.0
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 2.4e-178 630.2 839 43.3
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 4.1e-178 629.4 866 42.4
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 9.1e-178 628.2 848 42.9
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 5.9e-177 625.5 745 46.3
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.7e-176 624.0 835 43.2
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.9e-176 623.2 832 43.5
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 4.0e-173 612.8 850 41.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 9.7e-172 608.2 824 43.1
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.7e-171 607.4 824 42.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 3.1e-170 603.2 829 41.1
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.6e-169 600.9 839 42.3
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 1.0e-168 598.2 818 41.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 2.9e-168 596.7 829 40.8
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.1e-167 594.7 830 42.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.6e-166 590.9 838 43.2
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 2.7e-166 590.1 845 41.1
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 2.7e-166 590.1 826 42.5
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.8e-165 587.4 832 39.5
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 6.8e-165 585.5 822 41.2
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 6.8e-165 585.5 820 40.0
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.2e-164 584.7 853 41.9
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 1.2e-164 584.7 782 42.6
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.5e-164 584.3 833 40.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.6e-164 583.6 816 41.5
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 5.7e-164 582.4 828 41.2
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 7.5e-164 582.0 830 42.2
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 7.5e-164 582.0 824 39.4
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.3e-163 581.3 835 41.7
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.7e-163 580.9 832 40.6
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 1.7e-163 580.9 836 41.4
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.2e-163 580.5 826 40.8
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.8e-163 580.1 822 42.0
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.1e-162 578.2 830 40.6
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.8e-162 577.4 849 39.6
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.8e-162 577.4 804 40.7
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.8e-162 577.4 830 40.6
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.1e-162 576.2 833 41.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 5.4e-162 575.9 821 40.3
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.4e-162 575.9 831 40.9
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 7.0e-162 575.5 818 40.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 7.0e-162 575.5 828 39.9
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 7.0e-162 575.5 830 41.7
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 9.1e-162 575.1 818 41.0
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.2e-161 574.7 787 41.3
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.0e-161 573.9 829 41.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 2.0e-161 573.9 829 40.4
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 3.5e-161 573.2 829 41.7
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.9e-161 572.4 840 40.2
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.0e-160 571.6 829 41.5
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.3e-160 571.2 832 40.5
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 2.3e-160 570.5 832 39.7
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 3.8e-160 569.7 828 40.0
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 5.0e-160 569.3 796 40.1
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 6.5e-160 568.9 812 39.9
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 6.5e-160 568.9 818 39.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 6.5e-160 568.9 839 39.6
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.5e-159 567.8 832 41.0
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 4.2e-159 566.2 840 40.0
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 4.2e-159 566.2 834 39.4
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 5.5e-159 565.8 833 41.1
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.2e-159 565.5 829 40.3
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 9.5e-159 565.1 826 40.6
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 9.5e-159 565.1 827 41.2
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.6e-158 564.3 832 41.0
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 2.1e-158 563.9 818 39.9
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 4.0e-157 559.7 813 40.2
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 5.2e-157 559.3 832 41.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 6.8e-157 558.9 822 40.3
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.5e-156 557.8 836 40.9
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 3.4e-156 556.6 830 39.4
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.7e-155 554.3 831 39.2
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.7e-155 554.3 830 39.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 5.4e-154 549.3 828 40.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.3e-152 543.9 826 39.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 3.8e-152 543.1 800 39.8
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.9e-151 540.8 827 40.6
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 4.3e-151 539.7 830 39.8
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 7.3e-151 538.9 832 39.5
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.6e-150 537.7 876 38.5
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.6e-150 536.6 836 40.7
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 6.1e-150 535.8 682 41.6
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.8e-146 524.2 836 37.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 5.4e-146 522.7 826 37.9
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.3e-144 517.3 838 38.8
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 5.0e-144 516.2 877 38.3
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 7.3e-143 512.3 835 38.6
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.2e-142 511.5 835 38.2
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 1.8e-141 507.7 846 38.3
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.8e-140 502.7 746 39.7
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 2.5e-135 487.3 688 41.1
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.4e-133 481.5 592 42.6
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 8.9e-133 478.8 830 37.2
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 4.9e-131 473.0 844 37.1
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.1e-130 471.9 569 43.6
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.6e-126 458.0 479 46.1
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.4e-122 444.9 828 37.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.0e-116 424.5 715 36.4
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 6.7e-104 382.9 390 47.2
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.8e-102 376.7 644 38.2
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.7e-99 368.2 602 36.0
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.9e-98 364.8 389 48.6
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.9e-91 340.9 555 38.2
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.3e-83 315.5 775 30.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 2.7e-73 281.2 416 36.8
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.3e-70 272.3 513 37.2
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.1e-69 267.7 442 35.3
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 8.0e-65 253.1 445 38.7
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 3.3e-63 247.7 420 37.9
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 6.7e-56 223.4 479 37.4
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.8e-53 215.3 228 46.9
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.5e-42 178.3 459 32.5
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 2.3e-40 171.8 567 25.7
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.9e-29 135.6 197 43.7
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.6e-28 131.0 188 41.0
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.3e-26 124.4 89 62.9
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.2e-23 116.3 200 38.0
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.5e-18 98.6 398 29.9
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 4.7e-17 94.4 77 54.5
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.0e-16 91.3 91 53.8
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 6.8e-16 90.5 208 29.3
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 1.2e-15 89.7 85 51.8
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.6e-12 79.3 153 41.2
SEGI_01277 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 5.6e-10 70.9 105 44.8
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 1.6e-09 69.3 184 27.7
Cfa027011 Carpinus fangiana HOM05D002279 ORTHO05D002644 6.2e-09 67.4 291 24.1
Aqoxy1G01843 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.8e-08 65.9 327 23.2
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 2.6e-07 62.0 102 32.4
Os03g0123200 Oryza sativa ssp. japonica HOM05D006053 ORTHO05D008381 2.6e-07 62.0 77 40.3
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 4.4e-07 61.2 314 24.8
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 5.8e-07 60.8 315 23.8
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 5.8e-07 60.8 75 40.0
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 7.6e-07 60.5 309 23.6
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 9.9e-07 60.1 77 37.7
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 1.3e-06 59.7 97 34.0
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.7e-06 59.3 313 24.6
vmacro02100 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 1.7e-06 59.3 87 36.8
MCO03G286 Micromonas commoda HOM05D005319 ORTHO05D006632 2.2e-06 58.9 70 40.0
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 2.2e-06 58.9 329 23.1
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 2.9e-06 58.5 127 35.4
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 2.9e-06 58.5 127 35.4
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 2.9e-06 58.5 334 23.1
THA.LOC104807840 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 2.9e-06 58.5 109 35.8
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 3.8e-06 58.2 308 23.4
ECA246G0072 Erigeron canadensis HOM05D000142 ORTHO05D000124 3.8e-06 58.2 93 33.3
PSO063G1883 Papaver somniferum HOM05D000285 ORTHO05D000241 3.8e-06 58.2 77 37.7
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.8e-06 58.2 52 55.8
Atru.chr6.2401 Acer truncatum HOM05D000285 ORTHO05D000241 4.9e-06 57.8 77 35.1
Duzib211G0262 Durio zibethinus HOM05D000285 ORTHO05D000241 4.9e-06 57.8 76 31.6
Eucgr.J02246 Eucalyptus grandis HOM05D000285 ORTHO05D000241 4.9e-06 57.8 77 37.7
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 4.9e-06 57.8 304 23.4
Gohir.A07G086900 Gossypium hirsutum HOM05D000285 ORTHO05D000241 4.9e-06 57.8 76 31.6
Nn1g08185 Nelumbo nucifera HOM05D000142 ORTHO05D000124 4.9e-06 57.8 106 34.9
Hund17863 Selenicereus undatus HOM05D002279 ORTHO05D002644 4.9e-06 57.8 313 23.0
Sopen10g023080 Solanum pennellii HOM05D000142 ORTHO05D000124 4.9e-06 57.8 96 35.4
COL.COLO4_33039 Corchorus olitorius HOM05D000285 ORTHO05D000241 6.4e-06 57.4 76 31.6
Gohir.D07G091800 Gossypium hirsutum HOM05D000285 ORTHO05D000241 6.4e-06 57.4 76 31.6
Gorai.001G098300 Gossypium raimondii HOM05D000285 ORTHO05D000241 6.4e-06 57.4 76 31.6
Manes.17G112001 Manihot esculenta HOM05D000285 ORTHO05D000241 6.4e-06 57.4 77 37.7
PSO067G0060 Papaver somniferum HOM05D000285 ORTHO05D000241 6.4e-06 57.4 77 37.7
Peaxi162Scf01161g00115 Petunia axillaris HOM05D000285 ORTHO05D000241 6.4e-06 57.4 96 32.3
Potri.005G148100 Populus trichocarpa HOM05D002097 ORTHO05D002248 6.4e-06 57.4 79 35.4
PGR142G3836 Punica granatum HOM05D000285 ORTHO05D000241 6.4e-06 57.4 77 35.1
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 6.4e-06 57.4 339 21.5
Thecc.01G189300 Theobroma cacao HOM05D000285 ORTHO05D000241 6.4e-06 57.4 76 31.6
CARHR106480 Cardamine hirsuta HOM05D000142 ORTHO05D000124 8.4e-06 57.0 89 37.1
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 8.4e-06 57.0 311 23.8
Lalb_Chr08g0245181 Lupinus albus HOM05D000285 ORTHO05D000241 8.4e-06 57.0 93 31.2
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 8.4e-06 57.0 89 36.0
Thecc.08G084300 Theobroma cacao HOM05D000285 ORTHO05D000241 8.4e-06 57.0 91 33.0


User provided reference genes

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