Gene: Sopen10g023080

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g023080
  • Transcript Identifier Sopen10g023080.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 63414998-63415769 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g023080.1

Descriptions

  • Description Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta), Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). | GLYCINE RICH PROTEIN 7 (ATGRP7) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding | INVOLVED IN: in 12 processes | LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G21660
GO:0010501
ISO
PLAZA Integrative OrthologyRNA secondary structure unwinding AT2G21660
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT2G21660
GO:0006406
ISO
PLAZA Integrative OrthologymRNA export from nucleus AT2G21660
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT2G21660
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G21660
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT2G21660
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT2G21660
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT2G21660
GO:0010119
ISO
PLAZA Integrative Orthologyregulation of stomatal movement AT2G21660
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT2G21660
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT2G21660
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT2G21660
GO:0010043
ISO
PLAZA Integrative Orthologyresponse to zinc ion AT2G21660

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G21660
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G21660
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT2G21660
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT2G21660
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT2G21660

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G21660
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT2G21660
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G21660
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G21660
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G21660
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G21660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated