Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 6.8e-226 786.9 384 100.0
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 9.9e-52 208.4 314 42.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.4e-16 91.7 169 33.7
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.5e-15 88.2 165 34.5
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 2.0e-15 87.8 197 35.0
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 3.3e-15 87.0 135 37.8
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.7e-15 86.3 134 39.6
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 7.4e-15 85.9 180 32.8
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 7.4e-15 85.9 118 42.4
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 9.7e-15 85.5 119 41.2
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.3e-14 85.1 118 41.5
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.7e-14 84.7 137 38.0
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.7e-14 84.7 184 32.1
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.7e-14 84.7 146 34.9
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 2.2e-14 84.3 121 40.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 2.2e-14 84.3 127 37.0
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 2.2e-14 84.3 117 41.9
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 2.8e-14 84.0 176 30.7
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.7e-14 83.6 139 36.0
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.7e-14 83.6 119 40.3
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 3.7e-14 83.6 119 40.3
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 4.8e-14 83.2 136 36.8
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 4.8e-14 83.2 133 38.3
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.8e-14 83.2 118 40.7
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 6.3e-14 82.8 114 40.4
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 6.3e-14 82.8 121 38.0
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 6.3e-14 82.8 126 39.7
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 6.3e-14 82.8 176 33.5
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 6.3e-14 82.8 168 33.9
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 8.2e-14 82.4 139 37.4
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 8.2e-14 82.4 134 39.6
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 8.2e-14 82.4 118 39.0
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 8.2e-14 82.4 176 33.0
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 8.2e-14 82.4 130 36.2
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-13 82.0 122 39.3
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-13 82.0 122 39.3
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 1.1e-13 82.0 122 39.3
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 1.1e-13 82.0 122 39.3
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 1.1e-13 82.0 122 39.3
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.1e-13 82.0 121 40.5
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.1e-13 82.0 120 38.3
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 1.1e-13 82.0 135 37.0
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.1e-13 82.0 136 35.3
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.4e-13 81.6 184 31.5
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.4e-13 81.6 117 41.0
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.4e-13 81.6 119 37.8
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 1.4e-13 81.6 173 31.2
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.4e-13 81.6 121 38.8
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 1.8e-13 81.3 120 38.3
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 1.8e-13 81.3 121 35.5
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.8e-13 81.3 171 32.7
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 2.4e-13 80.9 122 35.2
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 2.4e-13 80.9 119 38.7
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.4e-13 80.9 121 38.0
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 2.4e-13 80.9 170 31.2
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.4e-13 80.9 120 38.3
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 4.1e-13 80.1 179 30.7
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 4.1e-13 80.1 118 38.1
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 4.1e-13 80.1 118 38.1
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 4.1e-13 80.1 119 37.0
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 7.0e-13 79.3 119 37.0
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 9.1e-13 79.0 120 36.7
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 9.1e-13 79.0 121 37.2
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.2e-12 78.6 190 32.1
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.2e-12 78.6 142 34.5
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.6e-12 78.2 169 32.0
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.6e-12 78.2 119 37.8
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 2.0e-12 77.8 119 40.3
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.0e-12 77.8 168 32.1
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.0e-12 77.8 168 32.1
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 2.0e-12 77.8 119 37.8
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 2.0e-12 77.8 121 37.2
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.0e-12 77.8 119 38.7
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 2.0e-12 77.8 119 38.7
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.6e-12 77.4 118 37.3
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.5e-12 77.0 137 33.6
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 3.5e-12 77.0 194 29.4
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 4.5e-12 76.6 125 33.6
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 5.9e-12 76.3 122 35.2
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 7.7e-12 75.9 121 33.9
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.3e-11 75.1 120 35.8
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 2.2e-11 74.3 147 33.3
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 5.0e-11 73.2 114 36.0
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.0e-11 73.2 117 35.0
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 8.5e-11 72.4 103 36.9
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.1e-10 72.0 101 36.6
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.2e-10 70.5 138 31.2
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.2e-10 70.5 138 31.2
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 4.2e-10 70.1 104 37.5
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 7.2e-10 69.3 147 30.6
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 2.1e-09 67.8 110 33.6
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 8.0e-09 65.9 111 32.4
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 4.0e-08 63.5 120 37.5
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 5.2e-08 63.2 110 38.2
PRCOL_00000148 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.2e-07 62.0 139 32.4
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 2.6e-07 60.8 104 36.5
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 7.5e-07 59.3 161 27.3
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 2.2e-06 57.8 104 33.7
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 4.8e-06 56.6 90 34.4


User provided reference genes

Program Settings