Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 9.2e-159 563.5 290 100.0
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.3e-148 528.5 290 93.4
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.5e-145 519.6 290 92.1
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 3.3e-116 422.2 284 72.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.1e-114 415.6 289 71.3
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.6e-113 412.5 290 70.3
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 4.5e-113 411.8 290 69.3
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 7.6e-113 411.0 290 70.3
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.7e-112 409.8 290 69.7
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.8e-112 408.7 290 68.6
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 4.9e-112 408.3 290 69.7
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 9.3e-111 404.1 290 67.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 9.3e-111 404.1 288 69.8
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 9.3e-111 404.1 290 69.3
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.6e-110 403.3 290 67.6
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.6e-110 403.3 290 68.3
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 2.1e-110 402.9 291 68.7
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 2.7e-110 402.5 288 68.8
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.5e-110 402.1 289 67.8
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.5e-110 402.1 290 67.6
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 4.6e-110 401.7 289 68.5
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 6.0e-110 401.4 290 67.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 6.0e-110 401.4 289 68.5
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 7.9e-110 401.0 289 67.8
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.0e-109 400.6 288 68.8
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.0e-109 400.6 290 68.3
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.3e-109 400.2 290 69.3
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.8e-109 399.8 290 67.6
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.8e-109 399.8 289 67.8
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.3e-109 399.4 287 68.3
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 3.0e-109 399.1 290 68.6
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.9e-109 398.7 289 67.5
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.1e-109 398.3 290 68.6
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.7e-109 397.9 289 68.2
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 8.7e-109 397.5 302 66.2
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 8.7e-109 397.5 287 69.3
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.5e-108 396.7 290 67.2
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 2.5e-108 396.0 289 67.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.5e-108 396.0 285 66.3
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.5e-108 396.0 287 67.2
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 3.3e-108 395.6 289 67.5
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 4.3e-108 395.2 290 66.9
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 4.3e-108 395.2 289 66.8
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 5.7e-108 394.8 290 66.9
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 5.7e-108 394.8 289 66.8
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 5.7e-108 394.8 290 66.9
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.4e-108 394.4 289 66.4
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 9.6e-108 394.0 289 66.4
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 66.6
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.3e-107 393.7 293 67.2
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 68.6
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 66.2
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.3e-107 393.7 290 66.6
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.6e-107 393.3 285 65.6
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 2.1e-107 392.9 289 67.5
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.1e-107 392.9 290 66.9
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.8e-107 392.5 289 67.8
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.7e-107 392.1 290 66.6
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 4.8e-107 391.7 289 66.8
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.8e-107 391.7 289 66.8
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 6.3e-107 391.3 290 66.2
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 8.2e-107 391.0 289 66.1
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 8.2e-107 391.0 289 66.1
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 8.2e-107 391.0 290 66.9
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 8.2e-107 391.0 290 66.9
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 8.2e-107 391.0 290 66.2
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 8.2e-107 391.0 289 67.5
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.1e-106 390.6 290 66.9
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.4e-106 390.2 289 65.7
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.4e-106 390.2 289 66.4
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.8e-106 389.8 289 66.1
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.4e-106 389.4 289 65.7
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.1e-106 389.0 289 66.1
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 3.1e-106 389.0 289 65.1
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 3.1e-106 389.0 289 65.7
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.1e-106 389.0 289 66.4
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.1e-106 389.0 290 66.9
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 3.1e-106 389.0 288 67.0
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.1e-106 388.7 287 65.5
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 4.1e-106 388.7 289 66.4
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 5.3e-106 388.3 289 65.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 5.3e-106 388.3 289 65.7
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 5.3e-106 388.3 289 65.7
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 5.3e-106 388.3 289 67.1
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.9e-106 387.9 289 65.4
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 9.0e-106 387.5 289 65.7
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 9.0e-106 387.5 289 65.7
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.2e-105 387.1 290 65.2
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 1.5e-105 386.7 289 65.4
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-105 386.7 289 65.4
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.5e-105 386.7 289 65.4
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 3.4e-105 385.6 289 65.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 5.9e-105 384.8 289 65.4
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 5.9e-105 384.8 289 64.4
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.3e-104 383.6 307 64.5
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.7e-104 383.3 289 65.4
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 2.2e-104 382.9 289 65.7
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 6.5e-104 381.3 323 61.3
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.1e-103 380.6 287 65.2
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 1.9e-103 379.8 289 65.1
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.5e-103 379.4 289 64.4
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 3.2e-103 379.0 288 65.3
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.2e-103 379.0 287 65.5
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 5.5e-103 378.3 290 63.8
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 5.5e-103 378.3 287 63.1
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 5.5e-103 378.3 290 62.8
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 7.2e-103 377.9 287 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 9.3e-103 377.5 289 65.1
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 9.3e-103 377.5 290 64.5
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.6e-102 376.7 294 63.6
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.6e-102 376.7 287 65.9
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.6e-102 375.2 287 65.2
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 7.9e-102 374.4 289 64.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 1.3e-101 373.6 287 64.1
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 3.9e-101 372.1 287 62.4
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.9e-101 372.1 306 62.7
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 2.5e-100 369.4 292 65.1
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 3.3e-100 369.0 303 61.7
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.8e-99 365.9 291 63.2
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 3.7e-99 365.5 302 62.9
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.1e-98 364.0 290 61.7
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.4e-98 362.8 293 62.5
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.5e-97 360.1 261 69.3
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.2e-96 356.3 293 62.1
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 6.5e-96 354.8 287 59.9
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 2.5e-95 352.8 290 62.4
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.0e-93 347.4 289 60.6
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.0e-93 345.9 292 61.0
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.1e-92 344.0 291 60.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.5e-92 343.6 291 60.1
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.5e-92 343.6 289 60.6
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.0e-92 343.2 291 60.5
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 2.0e-92 343.2 256 64.8
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 3.3e-92 342.4 274 62.0
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.7e-91 340.1 293 59.4
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.2e-91 339.7 448 44.4
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.4e-90 337.0 300 59.7
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.1e-90 335.9 294 58.5
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.6e-89 332.8 256 62.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 3.4e-89 332.4 288 58.0
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 4.5e-89 332.0 285 61.1
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.2e-86 323.9 308 55.8
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.6e-86 322.4 232 68.1
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 8.8e-85 317.8 234 66.7
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 2.6e-84 316.2 231 67.1
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 4.7e-78 295.4 287 53.7
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 6.1e-78 295.0 287 54.7
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 2.3e-77 293.1 298 53.0
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.7e-73 279.6 287 51.6
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.2e-72 276.6 281 50.9
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.2e-67 260.0 203 62.1
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 8.8e-61 238.0 270 49.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.2e-59 233.4 164 71.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 7.8e-49 198.4 154 61.0
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 3.5e-41 172.9 150 55.3
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 4.6e-41 172.6 113 70.8
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.6e-38 164.1 129 62.0
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.1e-21 108.2 82 68.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 2.4e-18 97.1 104 51.9
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 3.2e-18 96.7 145 41.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.7e-17 93.6 104 51.0
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 4.6e-17 92.8 302 30.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 6.0e-17 92.4 104 50.0
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 2.3e-16 90.5 66 65.2
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 3.0e-16 90.1 159 37.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 8.7e-16 88.6 75 58.7
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 5.6e-15 85.9 85 54.1
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 3.4e-12 76.6 57 57.9
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 5.8e-12 75.9 70 54.3
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 7.6e-12 75.5 72 56.9
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 2.4e-10 70.5 58 56.9
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 2.4e-10 70.5 58 56.9
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 6.7e-08 62.4 56 64.3
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 3.7e-06 56.6 65 50.8


User provided reference genes

Program Settings