Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 0.0e+00 1280.4 902 100.0
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.1e-254 882.9 827 81.9
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 5.2e-152 542.7 852 63.4
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 5.5e-117 426.4 895 47.2
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 3.0e-115 420.6 906 49.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.1e-113 414.5 836 46.3
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 4.8e-113 413.3 899 46.8
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.1e-112 412.1 894 46.2
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.7e-110 404.8 919 48.1
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 3.2e-109 400.6 807 55.5
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.6e-108 396.7 889 46.2
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 6.0e-108 396.4 909 46.2
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.0e-107 394.0 904 48.1
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.9e-107 393.7 851 50.9
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 3.3e-106 390.6 851 43.4
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 5.7e-106 389.8 896 43.5
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 9.7e-106 389.0 924 43.2
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.3e-105 388.7 934 45.9
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.2e-105 387.9 884 48.0
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.2e-105 387.9 805 48.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.7e-105 387.1 819 48.4
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 4.8e-105 386.7 844 45.3
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 8.2e-105 386.0 890 46.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 9.0e-104 382.5 910 45.3
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.5e-103 381.7 914 46.3
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.5e-103 381.7 892 46.0
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-103 381.7 914 46.8
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.4e-103 380.6 920 46.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 4.5e-103 380.2 842 47.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.5e-103 380.2 863 44.8
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 7.6e-103 379.4 895 38.3
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 7.6e-103 379.4 761 46.0
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.5e-102 376.3 887 46.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.5e-102 375.9 851 42.0
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.5e-101 374.4 889 46.0
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 3.2e-101 374.0 931 47.3
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 3.2e-101 374.0 825 53.3
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 5.5e-101 373.2 830 42.0
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.2e-100 372.1 904 44.8
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.2e-100 372.1 844 49.1
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.7e-100 370.9 764 46.9
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.6e-100 370.5 890 50.9
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.1e-100 369.8 849 41.9
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.8e-99 368.2 834 47.6
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 3.0e-99 367.5 825 45.1
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 3.9e-99 367.1 829 52.2
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 8.7e-99 365.9 904 41.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.9e-98 364.8 839 41.4
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 3.3e-98 364.0 846 47.4
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 3.3e-98 364.0 832 44.5
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 5.7e-98 363.2 949 40.7
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.7e-97 361.7 926 43.4
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.8e-97 360.9 914 44.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 3.7e-97 360.5 887 43.5
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.1e-96 359.0 820 48.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.4e-96 358.6 819 46.6
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.3e-96 356.7 935 43.2
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-95 355.1 906 40.8
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.0e-95 354.8 829 45.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 4.5e-95 353.6 834 48.0
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.2e-94 351.3 900 42.2
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 5.0e-94 350.1 820 45.4
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 6.5e-94 349.7 829 46.9
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 8.5e-94 349.4 829 47.3
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-93 349.0 836 43.3
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.9e-93 348.2 835 44.7
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.2e-93 347.4 827 44.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 4.2e-93 347.1 752 51.3
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 7.2e-93 346.3 915 45.4
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 9.4e-93 345.9 829 45.5
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 7.9e-92 342.8 940 41.4
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 3.0e-91 340.9 828 45.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 6.7e-91 339.7 929 43.4
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.5e-90 338.6 868 43.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.0e-90 338.2 900 41.8
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 7.4e-90 336.3 925 42.2
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.7e-89 335.1 905 42.9
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 2.8e-89 334.3 893 42.4
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.1e-88 332.4 913 43.5
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.4e-88 331.3 767 36.6
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 5.3e-88 330.1 913 42.8
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 6.9e-88 329.7 803 42.2
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 3.4e-87 327.4 820 43.3
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 4.5e-87 327.0 913 43.8
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 7.7e-87 326.2 948 42.0
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 7.7e-87 326.2 816 44.4
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.0e-86 325.9 843 42.2
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.0e-86 325.9 948 43.5
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 2.9e-86 324.3 901 42.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 3.8e-86 323.9 847 44.9
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 6.5e-86 323.2 900 43.7
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 8.5e-86 322.8 914 45.5
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 5.5e-85 320.1 900 44.2
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-84 318.9 900 43.3
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.6e-84 318.5 942 39.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.1e-84 318.2 928 42.9
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.1e-84 318.2 928 42.9
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.1e-84 318.2 884 41.1
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 4.7e-84 317.0 927 40.5
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.1e-84 316.6 836 42.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.8e-83 315.1 817 43.8
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.3e-82 310.8 845 43.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 4.4e-82 310.5 898 43.3
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 4.8e-81 307.0 884 41.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 4.8e-81 307.0 952 41.7
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.1e-80 305.8 836 45.5
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.6e-79 301.2 847 42.1
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 5.0e-78 297.0 909 38.6
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 6.1e-76 290.0 874 35.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 6.7e-75 286.6 813 43.8
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.0e-74 285.0 902 41.8
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.6e-74 284.6 778 42.9
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.8e-73 281.2 913 43.6
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.4e-72 278.9 778 41.8
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 9.1e-72 276.2 782 38.6
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 6.8e-67 260.0 748 44.0
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.3e-65 255.8 891 39.8
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.7e-65 255.4 749 42.9
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 2.2e-65 255.0 909 39.2
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 4.9e-57 227.3 331 50.5
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.1e-53 216.1 301 44.9
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.0e-51 209.5 659 36.6
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 8.9e-51 206.5 291 44.7
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 8.3e-49 199.9 815 34.8
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.1e-48 199.5 310 43.5
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.8e-48 198.7 279 44.4
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 5.0e-46 190.7 317 42.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-46 189.9 295 49.8
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.6e-44 185.7 389 40.1
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.9e-43 179.9 237 49.8
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.7e-39 168.3 248 50.4
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 8.1e-36 156.8 383 37.9
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 2.6e-34 151.8 95 74.7
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.9e-30 137.9 403 37.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.1e-27 128.3 142 50.0
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.9e-25 121.7 71 81.7
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 8.4e-25 120.2 164 46.3
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.6e-23 115.9 153 43.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 5.1e-22 110.9 82 65.9
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.9e-17 95.1 91 47.3
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.3e-13 81.3 106 47.2
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 9.0e-11 73.6 141 31.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-10 72.8 100 38.0
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 2.1e-07 62.4 74 39.2
Medtr1g097280 Medicago truncatula HOM05D004266 ORTHO05D005151 2.1e-07 62.4 80 36.2
Carub.0004s2583 Capsella rubella HOM05D004170 ORTHO05D005976 3.5e-07 61.6 80 33.8
Migut.N01203 Erythranthe guttata HOM05D004266 ORTHO05D005151 1.0e-06 60.1 81 35.8
AT2G43370 Arabidopsis thaliana HOM05D004170 ORTHO05D005976 3.9e-06 58.2 80 31.2
Cc09_g05020 Coffea canephora HOM05D004266 ORTHO05D005151 3.9e-06 58.2 80 35.0
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 3.9e-06 58.2 73 37.0
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.9e-06 58.2 106 41.5
Zm00001eb318310 Zea mays HOM05D004170 ORTHO05D005976 3.9e-06 58.2 77 32.5
vmacro07487 Vaccinium macrocarpon HOM05D000142 ORTHO05D007638 5.1e-06 57.8 78 41.0
MSTRG.21597 Avicennia marina HOM05D004266 ORTHO05D005151 8.7e-06 57.0 76 35.5
MSTRG.2878 Avicennia marina HOM05D004266 ORTHO05D005151 8.7e-06 57.0 76 35.5
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 8.7e-06 57.0 80 33.8


User provided reference genes

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