Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 8.7e-216 753.8 529 100.0
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 6.5e-70 269.2 347 49.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.8e-67 261.2 341 47.5
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.8e-67 259.2 286 50.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 8.8e-67 258.8 374 43.3
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.2e-66 258.5 420 42.6
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.5e-66 258.1 341 46.9
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.4e-66 256.9 363 45.2
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 7.5e-66 255.8 363 45.5
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 7.5e-66 255.8 403 43.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 9.8e-66 255.4 416 43.8
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.3e-65 255.0 374 46.0
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.7e-65 254.6 364 45.3
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.2e-65 254.2 417 41.7
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.2e-65 254.2 366 45.4
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.8e-65 253.8 335 46.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.7e-65 253.4 405 44.4
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 4.8e-65 253.1 351 44.4
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 6.3e-65 252.7 335 45.1
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 8.3e-65 252.3 367 45.0
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.1e-64 251.9 411 44.0
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.1e-64 251.9 398 43.0
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.4e-64 251.5 405 44.2
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.8e-64 251.1 411 44.3
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.8e-64 251.1 368 45.1
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.8e-64 251.1 332 46.7
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.4e-64 250.8 411 44.0
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.4e-64 250.8 424 43.9
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.4e-64 250.8 332 46.4
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 3.1e-64 250.4 340 48.2
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 7.0e-64 249.2 450 40.4
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 9.1e-64 248.8 333 45.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 9.1e-64 248.8 351 43.6
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.2e-63 248.4 394 42.1
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.6e-63 248.1 400 45.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.0e-63 247.7 333 45.3
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.5e-63 246.9 425 40.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.5e-63 246.5 347 43.5
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 4.5e-63 246.5 414 41.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.9e-63 246.1 338 44.1
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 5.9e-63 246.1 400 44.2
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 7.7e-63 245.7 402 42.8
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.0e-62 245.4 401 42.9
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.3e-62 245.0 344 44.8
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.3e-62 245.0 426 42.5
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.7e-62 244.6 325 44.3
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.7e-62 244.6 304 48.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.3e-62 244.2 326 45.1
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.9e-62 243.8 409 41.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.9e-62 243.8 323 45.5
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 2.9e-62 243.8 406 43.1
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.9e-62 243.8 339 44.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 3.8e-62 243.4 362 43.4
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 5.0e-62 243.0 365 43.8
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 6.6e-62 242.7 370 42.7
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 8.6e-62 242.3 413 40.0
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.1e-61 241.9 321 44.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.1e-61 241.9 348 42.8
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.1e-61 241.9 340 45.0
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.1e-61 241.9 432 42.4
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.5e-61 241.5 371 42.9
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.5e-61 241.5 294 48.0
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.5e-61 241.5 302 47.4
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.9e-61 241.1 408 39.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.9e-61 241.1 373 41.8
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.9e-61 241.1 410 39.5
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.9e-61 241.1 301 47.8
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.3e-61 240.4 445 41.8
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 4.2e-61 240.0 331 44.7
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 7.2e-61 239.2 301 47.2
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.2e-61 239.2 329 45.0
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.2e-61 239.2 301 47.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.2e-60 238.4 338 43.8
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-60 238.0 344 43.3
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.1e-60 237.7 294 48.0
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.8e-60 237.3 343 42.9
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.4e-59 235.0 397 41.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 2.3e-59 234.2 396 42.2
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 4.0e-59 233.4 361 43.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 4.0e-59 233.4 334 44.6
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.5e-58 231.5 322 41.9
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.6e-58 230.7 335 44.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 3.4e-58 230.3 425 40.7
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 4.4e-58 229.9 334 44.6
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.7e-58 229.6 373 41.8
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.7e-57 226.9 346 42.5
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 5.9e-55 219.5 334 40.1
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 5.9e-55 219.5 334 40.1
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.0e-54 218.8 393 37.4
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.0e-54 218.8 461 36.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.9e-53 214.5 333 43.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 4.3e-53 213.4 330 42.7
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 5.6e-53 213.0 372 37.9
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 7.3e-53 212.6 300 45.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.6e-52 211.5 348 39.1
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.8e-52 210.7 328 45.1
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 3.6e-52 210.3 341 42.8
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 8.0e-52 209.1 312 43.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.0e-51 208.8 253 48.2
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.4e-51 208.4 278 46.8
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 5.2e-51 206.5 391 41.9
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 8.9e-51 205.7 291 44.7
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.2e-50 205.3 290 42.4
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 2.6e-50 204.1 277 46.2
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.4e-50 203.8 278 45.0
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 5.8e-50 203.0 291 43.3
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 8.3e-49 199.1 347 40.6
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.0e-46 190.7 233 48.1
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 3.9e-46 190.3 304 38.2
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 3.1e-43 180.6 579 28.5
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.5e-42 178.3 186 52.2
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 9.8e-42 175.6 333 41.7
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.2e-41 174.5 380 35.5
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 8.3e-41 172.6 268 40.7
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.9e-40 171.4 325 41.8
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 6.0e-39 166.4 336 41.7
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 6.2e-36 156.4 296 38.9
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 5.2e-35 153.3 284 35.9
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 3.4e-34 150.6 338 34.6
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 7.1e-32 142.9 320 35.6
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.2e-31 142.1 203 41.4
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.1e-31 141.4 211 39.3
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.0e-22 112.5 152 46.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.3e-14 85.5 70 57.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 7.3e-13 79.7 293 26.3
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 9.9e-10 69.3 173 38.2
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.9e-08 65.1 143 38.5
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.9e-08 65.1 143 38.5
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.4e-08 64.7 147 36.7
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.3e-06 58.2 84 40.5


User provided reference genes

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