Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.8e-192 675.2 369 100.0
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.4e-156 556.6 370 81.6
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.0e-150 536.2 373 78.6
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 4.2e-92 342.4 364 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.7e-81 305.4 366 52.2
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 2.7e-62 243.4 325 46.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 4.9e-48 196.1 286 45.8
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 3.6e-35 153.3 341 39.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.4e-33 146.7 135 57.0
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 3.4e-33 146.7 135 57.0
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.3e-32 144.8 179 45.8
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.7e-32 144.4 135 55.6
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 2.9e-32 143.7 141 53.2
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 8.4e-32 142.1 174 49.4
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.1e-31 141.7 171 46.8
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.9e-31 141.0 174 47.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.2e-31 140.2 136 54.4
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.2e-31 140.2 151 49.0
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 4.2e-31 139.8 142 52.1
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 1.2e-30 138.3 142 52.1
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.6e-30 137.9 172 48.3
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.6e-30 137.9 175 46.3
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 3.5e-30 136.7 140 48.6
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.6e-30 136.3 138 55.1
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 4.6e-30 136.3 153 49.0
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 6.0e-30 136.0 142 54.2
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.0e-30 136.0 154 48.1
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.0e-29 135.2 138 54.3
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 1.0e-29 135.2 154 48.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.8e-29 134.4 138 51.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 2.3e-29 134.0 159 47.2
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 2.3e-29 134.0 194 43.3
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.3e-29 134.0 161 49.1
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.3e-29 134.0 170 46.5
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 3.0e-29 133.7 167 46.1
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.9e-29 133.3 189 41.8
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 5.1e-29 132.9 142 50.7
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 5.1e-29 132.9 143 50.3
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 5.1e-29 132.9 143 50.3
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 5.1e-29 132.9 143 50.3
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 5.1e-29 132.9 155 48.4
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 6.7e-29 132.5 157 45.9
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 6.7e-29 132.5 140 48.6
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 6.7e-29 132.5 187 43.3
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 8.7e-29 132.1 185 43.8
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.1e-28 131.7 202 42.6
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-28 131.7 166 46.4
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.5e-28 131.3 200 41.5
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.5e-28 131.3 165 45.5
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.5e-28 131.3 144 50.0
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 1.5e-28 131.3 200 43.0
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.9e-28 131.0 160 45.6
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.5e-28 130.6 167 44.9
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 2.5e-28 130.6 182 42.9
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 5.6e-28 129.4 136 51.5
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 5.6e-28 129.4 147 49.7
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.4e-28 129.0 145 49.7
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 7.4e-28 129.0 142 51.4
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 7.4e-28 129.0 141 49.6
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.4e-28 129.0 141 52.5
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 7.4e-28 129.0 162 45.1
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 7.4e-28 129.0 142 48.6
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 7.4e-28 129.0 143 49.7
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.6e-28 128.6 141 52.5
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.6e-28 128.6 141 52.5
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.3e-27 128.3 140 53.6
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.3e-27 128.3 175 44.6
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.3e-27 128.3 163 45.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.3e-27 128.3 170 45.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.6e-27 127.9 141 51.8
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.6e-27 127.9 169 45.0
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 2.1e-27 127.5 142 51.4
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.1e-27 127.5 142 51.4
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.1e-27 127.5 176 45.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 2.1e-27 127.5 179 41.3
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.1e-27 127.5 176 43.2
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 2.1e-27 127.5 170 47.6
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.7e-27 126.7 190 42.1
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.7e-27 126.7 149 54.4
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.7e-27 126.7 170 44.1
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 3.7e-27 126.7 140 51.4
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 3.7e-27 126.7 167 47.3
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 4.8e-27 126.3 136 51.5
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 8.1e-27 125.6 170 44.1
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 8.1e-27 125.6 183 41.5
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 8.1e-27 125.6 175 44.6
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.1e-26 125.2 144 50.0
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.1e-26 125.2 191 45.0
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.8e-26 124.4 138 51.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.8e-26 124.4 138 51.4
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.1e-26 123.6 152 45.4
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 3.1e-26 123.6 141 50.4
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 3.1e-26 123.6 141 49.6
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 3.1e-26 123.6 167 44.9
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 4.0e-26 123.2 200 40.0
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 4.0e-26 123.2 173 44.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 5.3e-26 122.9 170 43.5
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 5.3e-26 122.9 133 50.4
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 6.9e-26 122.5 175 42.3
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 9.0e-26 122.1 150 45.3
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 9.0e-26 122.1 167 44.3
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.2e-25 121.7 172 45.9
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.2e-25 121.7 152 45.4
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.2e-25 121.7 146 49.3
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.5e-25 121.3 166 45.2
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.0e-25 120.9 167 44.9
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 2.6e-25 120.6 154 46.1
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.6e-25 120.6 154 46.1
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 2.6e-25 120.6 154 46.1
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 2.6e-25 120.6 154 46.1
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.6e-25 120.6 146 50.0
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.6e-25 120.6 169 42.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 3.4e-25 120.2 156 48.7
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 4.5e-25 119.8 149 49.7
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 4.5e-25 119.8 150 52.7
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 4.5e-25 119.8 150 52.7
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.5e-25 119.8 150 52.7
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 4.5e-25 119.8 174 40.8
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 4.5e-25 119.8 143 49.0
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 7.6e-25 119.0 153 45.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 7.6e-25 119.0 166 46.4
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 1.0e-24 118.6 157 45.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.0e-24 118.6 153 45.8
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.0e-24 118.6 153 45.8
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.3e-24 118.2 143 45.5
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.3e-24 118.2 161 46.0
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.3e-24 118.2 166 44.6
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 2.2e-24 117.5 150 50.7
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 2.2e-24 117.5 155 47.7
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 2.2e-24 117.5 155 47.7
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 2.2e-24 117.5 128 50.0
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 8.4e-24 115.5 181 42.5
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 8.4e-24 115.5 122 48.4
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 1.1e-23 115.2 153 46.4
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.4e-23 114.8 200 38.0
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 3.2e-23 113.6 169 43.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.2e-23 113.6 151 47.0
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 2.1e-22 110.9 147 44.2
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 4.6e-22 109.8 112 51.8
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 3.9e-21 106.7 150 42.7
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.6e-19 101.3 144 43.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.7e-19 100.1 144 44.4
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 4.8e-19 99.8 144 43.1
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.8e-18 97.8 136 44.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 2.6e-17 94.0 115 53.9
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 6.5e-16 89.4 114 46.5
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 9.3e-15 85.5 167 35.9
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.3e-13 80.9 150 37.3
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.1e-12 78.6 164 34.1
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.7e-12 76.3 176 35.2
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 9.7e-12 75.5 137 38.0
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.7e-11 73.6 100 42.0
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 6.9e-10 69.3 102 41.2
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 9.0e-10 68.9 89 46.1
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 5.9e-09 66.2 69 44.9
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.3e-08 65.1 65 46.2
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.7e-08 64.7 63 47.6
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-08 63.9 65 46.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 3.6e-06 57.0 64 50.0


User provided reference genes

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